Hi all, I am using a previous script to update a pipeline for pre-processing diffusion data. My objective related to this question is the (what I think is a hidden) argument “- -12” when using bbregister (v. 1.49.2.3 FreeSurfer 5.3). Will this denote 12 degrees of freedom for my registration? If so, why is this argument hidden (not in the manual or --help) and what are your insights when registering diffusion data to the Freesurfer T1 image? Should I keep 12dof or just do a simple rigid body registraion (e.g. 6 dof)
Thanks in advance for your response, Rodrigo
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