Hi all, I received an error in one of the steps of recon-all. The error is "No such file or directory" at the end of one of the registration processes.
The step was mris_register -curv. The command was: mris_register -curv ../surf/lh.sphere <FS_DIR>/average/lh.average.curvature.filled.buckner40.tif ../surf/lh.sphere.reg I already checked that ../surf/lh.sphere and <FS_DIR>/average/lh.average.curvature.filled.buckner40.tif exist (and are readable). I also checked that the output directorry (../surf/ ) has the proper permisons to write. The version of mris_register is "stable5". Finally, the complete output message is (Please, note that the parts with <> have been edited by me for privacy reasons: #-------------------------------------------- #@# Surf Reg lh Sun Aug 2 00:52:59 BST 2015 <SUBJECT_DIR>/scripts mris_register -curv ../surf/lh.sphere <FS_DIR>/average/lh.average.curvature.filled.buckner40.tif ../surf/lh.sphere.reg using smoothwm curvature for final alignment $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading surface from ../surf/lh.sphere... reading template parameterization from <FS_DIR>/average/lh.average.curvature.filled.buckner40.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=<HOST>., nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=<HOST>., nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc curvature mean = -0.000, std = 0.575 curvature mean = 0.028, std = 0.935 curvature mean = -0.002, std = 0.850 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (16.00, 32.00, -64.00) sse = 463438.8, tmin=0.7880 d=16.00 min @ (0.00, -4.00, 4.00) sse = 460445.8, tmin=2.3467 d=8.00 min @ (0.00, 0.00, -2.00) sse = 460199.6, tmin=3.1967 d=4.00 min @ (0.00, 0.00, 1.00) sse = 459864.8, tmin=4.0376 d=2.00 min @ (-0.50, -0.50, 0.00) sse = 459815.2, tmin=4.8841 d=1.00 min @ (0.00, -0.25, 0.25) sse = 459808.6, tmin=5.7246 d=0.50 min @ (0.12, 0.38, -0.38) sse = 459786.2, tmin=6.5623 mrisComputeCorrelationTerm: delta is not finite at vno 0 MRISrigidBodyAlignGlobal() done 6.56 min No such file or directory Linux <HOST> 2.6.32-431.el6.x86_64 #1 SMP Sun Nov 10 22:19:54 EST 2013 x86_64 x86_64 x86_64 GNU/Linux recon-all -s 1398979 exited with ERRORS at Sun Aug 2 01:00:20 BST 2015 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting Thanks in advance.
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