Hi Silas what do you want to do with the labels? As for whether to do it on fsaverage or individuals, you could start with fsaverage and map it to your other subjects and see how accurate it looks
cheers Bruce On Tue, 21 Jul 2015, Silas wrote: > Dear Freesurfer team, > I've created my own labels using tksurfer and common anatomical guidelines - > and my next step is to apply these labels to my subjects and analyze (ROI) > cortical thickness or volume (first of all), functional data and myelination > data. > 1 - Do you suggest drawing a label on the surface of fsaverage and applying > this label to the other subjects (e.g. using mri_label2label) - or drawing a > label on each subjects surface? > 2 - What is my next step? Do i have to run recon-all again with my new label > in the labels folder - or should i experiment with mri_label2vol and > mri_label2annot? > 3 - Do you have an existing guide in this kind of analysis? > > Thanks! Best, Silas > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
