Dear Freesurfer team, I've created my own labels using tksurfer and common anatomical guidelines - and my next step is to apply these labels to my subjects and analyze (ROI) cortical thickness or volume (first of all), functional data and myelination data.1 - Do you suggest drawing a label on the surface of fsaverage and applying this label to the other subjects (e.g. using mri_label2label) - or drawing a label on each subjects surface?2 - What is my next step? Do i have to run recon-all again with my new label in the labels folder - or should i experiment with mri_label2vol and mri_label2annot?3 - Do you have an existing guide in this kind of analysis? Thanks! Best, Silas
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