Hi Isabel, open a terminal and type:
cd /Applications/freesurfer sudo mv license.txt .license <your_admin_password> That's it. Best, M 2015-06-17 22:19 GMT+02:00 isabel martinez tejada < isa_martinez...@hotmail.com>: > I cannot put a "." in the file name because Mac doesn't allow it. It says > that a file that starts with a dot is an invisible file and there is no way > I can do it, its only for special files of the system. > > Thanks, > > Isabel > > ------------------------------ > From: bat...@gmail.com > Date: Wed, 17 Jun 2015 06:58:03 -1000 > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] tksurfer > > > Dear Isabel, > > the “.” is part of the name of the file, that is why the system cannot > find it. > > Hope this helps, > > Rodolphe. > > `·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.· > Rodolphe Nenert, Ph.D. > Department of Neurology > 312 Civitan International Research Center > 1719 6th avenue south > Birmingham, AL, 35294-0021 > > Office: *205.975.3885 <205.975.3885>* > Mob: *205.566.3854 <205.566.3854>* > Web: http://www.rnenert.org > > `·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.·´´¯``·.¸¸.· > > On Jun 17, 2015, at 4:05 AM, isabel martinez tejada < > isa_martinez...@hotmail.com> wrote: > > Dear experts, > > I am using a Mac that runs bash shell. I have performed a group analysis > and would like to visualize the results. When using tksurfer I come up with > a license error. > > The lines of commands I am running are: > export FREESURFER_HOME=/Applications/freesurfer > source $FREESURFER_HOME/SetUpFreeSurfer.sh > > > export SUBJECTS_DIR=/Users/IsabelMartinez/Documents/group1 > echo $SUBJECTS_DIR > cd $SUBJECTS_DIR > > > > > tksurfer fsaverage lh inflated \ > -annot aparc.annot -fthresh 2 \ > -overlay lh.gender.glmdir/Contrast1/sig.mgh > > The error I get is the following: > > FreeSurfer license file /Applications/freesurfer/.license not found > > > I have a license.txt (without the dot at the beginning) stored in that > folder, so I don't know what the problem is. > > > Thank you for your attention, > > > Isabel > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > > _______________________________________________ Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The > information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Partners Compliance > HelpLine at http://www.partners.org/complianceline . If the e-mail was > sent to you in error but does not contain patient information, please > contact the sender and properly dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
