Hello Feng Liu, What is the terminal output when you enter the following commands:
$> cd /media/sf_E_DRIVE/output/nv001/mri $> mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz -Zeke > Dear freesurfer experts, > > I came across a problem when I run freesurfer. I just download the > freesurfer software ( VirtualboxXubuntu 12.04stable v5.3.015 Aug > 2013freesurfer-Virtualbox-linux-x86-stable-pub-v5.3-full.vdi.gz9.0G > ). I install the software and configuration, and I changed subjects_dir as > /media/sf_E_DRIVE. When I executed the command recon-all -s nv001 -all, > there is error in the command window. > > The information of freesurfer problem are as follows: > FREESURFER_HOME: /usr/local/freesurfer > > Build stamp: freesurfer-Linux-centos4-stable-pub-v5.3.0 > > Debian version: wheezy/sid > > Kernel info: Linux 3.2.0-23-generic i686 > > --------------------------------------------------------------------- > Please include the following additional information in your report: > > 1) subject name > nv001 > 2) the entire command-line executed > recon-all -s nv001 -all > 3) the error message generated > INFO: extension is mgz > #-------------------------------------------- > #@# Talairach Sun Jun 14 12:25:31 EDT 2015 > /media/sf_E_DRIVE/output/nv001/mri > > mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale > --i orig.mgz --o orig_nu.mgz > > Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 > 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux > > recon-all -s nv001 -all exited with ERRORS at Sun Jun 14 12:25:42 EDT > 2015 > > For more details, see the log file > /media/sf_E_DRIVE/output/nv001/scripts/recon-all.log > To report a problem, see > http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > 4) optionally include the subject's /script/recon-all.log > Attached > > However, if I am not change the subjects_dir (usr the default: > /usr/local/freesurfer/subjects), there is no error information. > > I do not know where I am wrong. > Would greatly appreciate any form of help! > > 2015-06-15 > > > > Feng Liu, Ph.D. > Department of Radiology, > Tianjin Medical University General Hospital, > No. 154, Anshan Road, Heping District, Tianjin > 300052._______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
