Hi Freesurfer, We've carried out the mri_label2vol step for ROIs in one hemisphere. When opening in ITKsnap the orientations appeared flipped, with the axial ROIs overlayed onto the coronal orientation, and coronal over the axial, and the sagittal plane appeared rotated.
Can anyone help us fix this so we can map our ROIs to our reg file to create the vol file? Is this in the --proj flag? Also, should the --identity flag influence this? Thanks, Stefani
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