Is there a file called ./rh.unknown.label ?
On 5/25/15 5:37 AM, Liu Y wrote:
Dear Freesurfers,
I tried to generate annotations by using the command mris_label2annot
--s K_TS66 --h rh --ctab aparc.annot.ctab --a Liu --nhits nhits.mgh.
But Could not succeed. Any helps would be appreciated.
------- freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /home/Liu/freesurfer
FSFAST_HOME /home/Liu/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /home/Liu/freesurfer/subjects
MNI_DIR /home/Liu/freesurfer/mni
FSL_DIR /usr/local/fsl
under folder /home/Liu/freesurfer/subjects/K_TS66/label, I run
mris_label2annot --s K_TS66 --h rh --ctab aparc.annot.ctab --a Liu
--nhits nhits.mgh.
output:
Reading ctab aparc.annot.ctab
Number of ctab entries 36
INFO: no labels specified, generating from ctab
0 ./rh.unknown.label
1 ./rh.bankssts.label
2 ./rh.caudalanteriorcingulate.label
3 ./rh.caudalmiddlefrontal.label
4 ./rh.corpuscallosum.label
5 ./rh.cuneus.label
6 ./rh.entorhinal.label
7 ./rh.fusiform.label
8 ./rh.inferiorparietal.label
9 ./rh.inferiortemporal.label
10 ./rh.isthmuscingulate.label
11 ./rh.lateraloccipital.label
12 ./rh.lateralorbitofrontal.label
13 ./rh.lingual.label
14 ./rh.medialorbitofrontal.label
15 ./rh.middletemporal.label
16 ./rh.parahippocampal.label
17 ./rh.paracentral.label
18 ./rh.parsopercularis.label
19 ./rh.parsorbitalis.label
20 ./rh.parstriangularis.label
21 ./rh.pericalcarine.label
22 ./rh.postcentral.label
23 ./rh.posteriorcingulate.label
24 ./rh.precentral.label
25 ./rh.precuneus.label
26 ./rh.rostralanteriorcingulate.label
27 ./rh.rostralmiddlefrontal.label
28 ./rh.superiorfrontal.label
29 ./rh.superiorparietal.label
30 ./rh.superiortemporal.label
31 ./rh.supramarginal.label
32 ./rh.frontalpole.label
33 ./rh.temporalpole.label
34 ./rh.transversetemporal.label
35 ./rh.insula.label
$Id: mris_label2annot.c,v 1.17 2011/03/02 00:04:32 nicks Exp $
cwd /home/Liu/freesurfer/subjects/K_TS66/label
cmdline mris_label2annot --s K_TS66 --h rh --ctab aparc.annot.ctab --a
Liu --nhits nhits.mgh
sysname Linux
hostname D4201Z
machine x86_64
user Liu
subject K_TS66
hemi rh
SUBJECTS_DIR /home/Liu/freesurfer/subjects
ColorTable aparc.annot.ctab
AnnotName Liu
NHitsFile nhits.mgh
nlables 36
LabelThresh 0 0.000000
Loading /home/Liu/freesurfer/subjects/K_TS66/surf/rh.orig
No such file or directory
mris_label2annot: could not open label file ./rh.unknown.label
No such file or directory
ERROR: reading ./rh.unknown.label
There is indeed a rh.orig file under
/home/Liu/freesurfer/subjects/K_TS66/surf/
Thanks,
Yawu
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