Thanks, I have resolved for tksurfer. However, in freeviewer I'm not able visualize correctly the labels of perirhinal and entorhinal in aparc+aseg. Stefano
----Messaggio originale---- Da: fis...@nmr.mgh.harvard.edu Data: 21-mag-2015 21.48 A: <std...@virgilio.it>, "Freesurfer support list"<freesurfer@nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] R: Re: Hippo-subfields visualization sure, just load the labels into tksurfer or freeview On Thu, 21 May 2015, std...@virgilio.it wrote: > Thanks Eugenio. Point A is resolved: some typos in line command.But, I do > not found the label of perirhinal in aparc+aseg. > Is possible to visualize the enthorhinal, perirhinal and parahippocampus on > a surface? > > Stefano > > ----Messaggio originale---- > Da: e.igles...@bcbl.eu > Data: 20-mag-2015 23.05 > A: <std...@virgilio.it>, "Freesurfer support > list"<freesurfer@nmr.mgh.harvard.edu> > Ogg: Re: [Freesurfer] Hippo-subfields visualization > > Hi Stefano, > What error do you exactly get when you run the command to visualize the > segmentation? If you didn't get any error message, please bear in mind that, > because it'd loading a bunch of files simultaneously, it takes a while to > load. > Regarding B and C: you can extract volumetric masks for cortical structures > from the aseg+aparc volume. > /Eugenio > > > Juan Eugenio Iglesias > Postdoctoral researcher BCBL > www.jeiglesias.com > www.bcbl.eu > > Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer > > > ----- Original Message ----- > From: std...@virgilio.it > To: freesurfer@nmr.mgh.harvard.edu > Sent: Wednesday, May 20, 2015 9:14:05 PM > Subject: [Freesurfer] Hippo-subfields visualization > > > > Hi list, > > > I'm using version 5.3 and I have performed hippo-subfields analysis. > > > A- I'd like to visualize the mask of each subfield on the T1. > > > In subid/mri, I run the command line above: > > > freeview nu.mgz -p-labels posterior_left_* posterior_Left-Hippocampus.mgz > -p-labels posterior_right_* posterior_Right-Hippocampus.mgz -p-prefix > posterior_ -p-lut $FREESURFER_HOME/FreeSurferColorLUT.txt > > > but I can not visualize the subfields ROI on the T1 > > > B- How I can visualize the entorhinal, perirhinal and parahippocampal on T1 > of a subjects? > > > C- I would like to have the ROI entorhinal, perirhinal and parahippocampal > for each subject and use it as masks. How can I do? > > > Thanks, > > > > > Stefano > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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