Thanks Eugenio. Point A is resolved: some typos in line command.But, I do not found the label of perirhinal in aparc+aseg.Is possible to visualize the enthorhinal, perirhinal and parahippocampus on a surface? Stefano
----Messaggio originale---- Da: e.igles...@bcbl.eu Data: 20-mag-2015 23.05 A: <std...@virgilio.it>, "Freesurfer support list"<freesurfer@nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] Hippo-subfields visualization Hi Stefano, What error do you exactly get when you run the command to visualize the segmentation? If you didn't get any error message, please bear in mind that, because it'd loading a bunch of files simultaneously, it takes a while to load. Regarding B and C: you can extract volumetric masks for cortical structures from the aseg+aparc volume. /Eugenio Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer ----- Original Message ----- From: std...@virgilio.it To: freesurfer@nmr.mgh.harvard.edu Sent: Wednesday, May 20, 2015 9:14:05 PM Subject: [Freesurfer] Hippo-subfields visualization Hi list, I'm using version 5.3 and I have performed hippo-subfields analysis. A- I'd like to visualize the mask of each subfield on the T1. In subid/mri, I run the command line above: freeview nu.mgz -p-labels posterior_left_* posterior_Left-Hippocampus.mgz -p-labels posterior_right_* posterior_Right-Hippocampus.mgz -p-prefix posterior_ -p-lut $FREESURFER_HOME/FreeSurferColorLUT.txt but I can not visualize the subfields ROI on the T1 B- How I can visualize the entorhinal, perirhinal and parahippocampal on T1 of a subjects? C- I would like to have the ROI entorhinal, perirhinal and parahippocampal for each subject and use it as masks. How can I do? Thanks, Stefano _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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