Dear experts, I tried to process our data with the dev version of freesurfer. Unfortunately the problem with FLAIR pial surface correction still persists. I have uploaded the data to your ftp server ( anonym...@surfer.nmr.mgh.harvard.edu/transfer/incoming ) that you can inspect the results.
The files are: FLAIRpial_OK.tar.gz - subject where it looks that the pial correction worked FLAIRpial_not_OK.tar.gz - subject where it seems that the pial correction failed Regards, Antonin _____ From: Z K [mailto:zkauf...@nmr.mgh.harvard.edu] To: Bruce Fischl [mailto:fis...@nmr.mgh.harvard.edu], Antonin Skoch [mailto:a...@medicon.cz] Sent: Wed, 13 May 2015 16:39:26 +0100 Subject: Re: [Freesurfer] FLAIRpial correction fails in some cases Hello Antonin, Please try processing your subject with the dev version of freesurfer as it may fix the issue you are encountering. It can be downloaded and installed from the following ftp site: ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev -Zeke On 05/13/2015 09:43 AM, Bruce Fischl wrote: > Zeke: can you get Antonin a beta of 6.0 so he can see if it fixes his > flairpial problems? > > thanks > Bruce > On Wed, 13 May 2015, Antonin Skoch wrote: > >> Dear FreeSurfer experts, >> >> we are using FLAIR images to improve pial surface detection. In many >> cases >> this works OK, however, in some cases this procedure fails and the >> corrected >> pial surfaces are much worse than before. >> >> I uploaded 2 example subjects FLAIRpial_OK and FLAIRpial_not_OK to >> >> ftp://surfer.nmr.mgh.harvard.edu/transfer/incoming >> >> Could you please look at them and comment on what is the reason why it >> did >> not work in the subject FLAIRpial_not_OK and give suggestion what to >> do in >> such cases? >> >> Regards, >> >> Antonin Skoch >> >> >> >> > > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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