Hi Rachel what do you mean that it's a "screenshot of talairach.xfm"? Did you apply the transform to this volume? The bright spot is some cause for concern and probably is why stuff was excluded. Can you look back through your data and see where the bright patch first appears (rawavg.mgz? orig.mgz? nu.mgz, norm.mgz, etc...)
Also, please include the entire thread in your responses as otherwise we will lose track of things. cheers Bruce On Fri, 24 Apr 2015, Rachel Jonas wrote: > Yes, attached is a screenshot of talairach.xfm. It does look brighter in the > same region that was excluded in the white/pial matter. Could this be the > problem, and what do you suggest I do? Thanks!! > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
