Hi Rachel looks like the intensity normalization failed, although there might have been an earlier failure that caused it. Have you checked the talairach.xfm? If you can't figure it out, upload the subject dir and we will take a look
cheers Bruce On Mon, 20 Apr 2015, Rachel Jonas wrote: > Hi Freesurfer Users, > After running recon-all on a participant, I have found that a large chunk of > the brain was not included in the white/pial matter boundaries. Usually this > is fixable with manual edits, but in this case, it's a pretty large left > frontal section. The scan quality isn't particularly bad, and so I'm not > sure what's causing this. I've tried re-running this subject multiple times, > and the same problem keeps coming up. I've attached a few screenshots > (including a 3d rendering). > > Any help/advice would be greatly appreciated! > > Thank you, > Rachel > > > -- > Rachel K. Jonas > PhD Candidate, NeuroscienceUCLA Semel Institute for Neuroscience and Human > Behavior > 760 Westwood Plaza, Suite B8-169 > Los Angeles, CA 90095 > (917) 952-7930 > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
