A-reum, Opening jpeg compressed dicoms is new feature so please bear with us as we try and get this working for you. Use the link below to download the libdcmjpeg.so.3.6.0 file.
ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurfer/dev_binaries/centos6_x86_64/libdcmjpeg.so.3.6 Once the download is complete, please copy the file into your $FREESURFER_HOME/lib folder. Additionally, you will need to type the following command into your terminal window AFTER you load freesurfer. (If you are using bash) export LD_LIBRARY_PATH=$FREESURFER_HOME/lib (Or, if you are using csh) setenv LD_LIBRARY_PATH $FREESURFER_HOME/lib Please let us know if this solves the issue. -Zeke > Hi doug > > dcmdjpeg.fs path is /usr/local/freesurfer/bin (FREESURFER_HOME/bin) > > I click the /tmp/root.tmp.decompressed.dcm.QGcfri.dcmdjpeg.out file. and > then show up these > > dcmdjpeg.fs: error while loading shared libraries: libdcmjpeg.so.3.6: > cannot open shared object file: No such file or directory > > always error in tmp file(x signed root.tmp.decompressed.dcm.000). > > so, fix the x signed root.tmp.decompressed files... and i have no > libdcmjpeg.so.3.6.. i need it. > > 2015-04-03 12:39 GMT+09:00 A-reum Min <naniy...@gmail.com>: > >> Hi doug >> >> dcmdjpeg.fs path is /usr/local/freesurfer/bin (FREESURFER_HOME/bin) >> >> I click the /tmp/root.tmp.decompressed.dcm.QGcfri.dcmdjpeg.out file. and >> then show up these >> >> dcmdjpeg.fs: error while loading shared libraries: libdcmjpeg.so.3.6: >> cannot open shared object file: No such file or directory >> >> always error in tmp file(x signed root.tmp.decompressed.dcm.000). >> >> so, fix the x signed root.tmp.decompressed files... and i have no >> libdcmjpeg.so.3.6.. i need it. >> >> >> >> 2015-04-03 7:02 GMT+09:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu>: >> >>> Is dcmdjpeg.fs in your path? What are the contents of the file >>> /tmp/root.tmp.decompressed.dcm.QGcfri.dcmdjpeg.out ? >>> >>> >>> On 04/02/2015 04:53 PM, A-reum Min wrote: >>> > Hi doug. >>> > I try this as a test. >>> > (here is a my terminal) >>> > >>> *********************************************************************************************************** >>> > [areum@localhost ~]$ su >>> > Password: >>> > [root@localhost areum]# tcsh >>> > [areum@localhost areum]# setenv FREESURFER_HOME /usr/local/freesurfer >>> > [areum@localhost areum]# source $FREESURFER_HOME/SetUpFreeSurfer.csh >>> > -------- freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 -------- >>> > Setting up environment for FreeSurfer/FS-FAST (and FSL) >>> > FREESURFER_HOME /usr/local/freesurfer >>> > FSFAST_HOME /usr/local/freesurfer/fsfast >>> > FSF_OUTPUT_FORMAT nii.gz >>> > SUBJECTS_DIR /usr/local/freesurfer/subjects >>> > MNI_DIR /usr/local/freesurfer/mni >>> > [areum@localhost areum]# setenv SUBJECTS_DIR >>> > /usr/local/freesurfer/subjects/PISA_SPGR/1 >>> > [areum@localhost areum]# setenv FS_LOAD_DWI 0 >>> > [areum@localhost areum]# mri_convert >>> > /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071579.dcm junk.mgh >>> > mri_convert /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071579.dcm >>> > junk.mgh >>> > $Id: mri_convert.c,v 1.219 2015/03/24 17:25:41 greve Exp $ >>> > reading from >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071579.dcm... >>> > Starting DICOMRead2() >>> > dcmfile = /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071579.dcm >>> > dcmdir = /usr/local/freesurfer/subjects/PISA_SPGR/1 >>> > Ref Series No = 3 >>> > Found 246 files, checking for dicoms >>> > Found 244 dicom files in series. >>> > First Sorting >>> > Computing Slice Direction >>> > Vs: -0.8 0 0 >>> > Vs: -1 0 0 >>> > Second Sorting >>> > Counting frames >>> > nframes = 1 >>> > nslices = 244 >>> > ndcmfiles = 244 >>> > IsDWI = 0 >>> > PE Dir = ROW (dicom read) >>> > Loading pixel data >>> > JPEG compressed, decompressing >>> > cd /home/areum >>> > dcmdjpeg.fs +te >>> > /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071579.dcm >>> > /tmp/root.tmp.decompressed.dcm.QGcfri >& >>> > /tmp/root.tmp.decompressed.dcm.QGcfri.dcmdjpeg.out >>> > ERROR: 32512, see /tmp/root.tmp.decompressed.dcm.QGcfri.dcmdjpeg.out >>> > for more details >>> > >>> ************************************************************************************************************************************** >>> > error occured again.. ã ã >>> > when i type the source $FREESURFER_HOME/SetUpFreeSurfer.csh, then >>> > show up these >>> > -------- freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 -------- >>> > Setting up environment for FreeSurfer/FS-FAST (and FSL) >>> > FREESURFER_HOME /usr/local/freesurfer >>> > FSFAST_HOME /usr/local/freesurfer/fsfast >>> > FSF_OUTPUT_FORMAT nii.gz >>> > SUBJECTS_DIR /usr/local/freesurfer/subjects >>> > MNI_DIR /usr/local/freesurfer/mni >>> > But... my own data directory is >>> /usr/local/freesurfer/subjects/PISA_SPGR/1 >>> > so my SUBJECTS_DIR is /usr/local/freesurfer/subjects/PISA_SPGR/1 >>> > is it okay...? >>> > and i will send my dicom file to u... plz help me as soon as possible >>> ã ã >>> > 2015-04-03 5:02 GMT+09:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu >>> > <mailto:gr...@nmr.mgh.harvard.edu>>: >>> > >>> > Can you send me >>> > /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071580.dcm >>> > ? I might not be able to get to it until after the 13th. >>> > >>> > Also, try this as a test: >>> > >>> > setenv FS_LOAD_DWI 0 >>> > mri_convert >>> > /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071580.dcm junk.mgh >>> > >>> > If that works, you can set that environment variable and run >>> > recon-all. >>> > But if you can send me the dicom above I'd appreciate it. >>> > >>> > doug >>> > >>> > >>> > On 04/02/2015 01:40 AM, A-reum Min wrote: >>> > > hi doug >>> > > >>> > > recon is still not working... >>> > > >>> > > if i type the >>> > > recon-all -i >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071579.dcm >>> > > -i /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071580.dcm -all >>> > -s subj001 >>> > > >>> > > then error occured >>> > > >>> > >>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ >>> > > >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071580.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071581.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071582.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071583.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071584.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071585.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071586.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071587.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071588.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071589.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071590.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071591.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071592.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071593.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071594.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071595.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071596.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071597.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071598.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071599.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071600.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071601.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071602.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071603.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071604.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071605.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071606.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071607.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071608.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071609.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071610.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071611.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071612.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071613.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071614.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071615.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071616.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071617.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071618.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071619.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071620.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071621.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071622.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071623.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071624.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071625.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071626.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071627.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071628.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071629.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071630.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071631.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071632.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071633.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071634.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071635.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071636.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071637.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071638.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071639.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071640.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071641.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071642.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071643.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071644.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071645.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071646.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071647.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071648.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071649.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071650.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071651.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071652.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071653.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071654.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071655.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071656.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071657.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071658.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071659.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071660.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071661.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071662.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071663.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071664.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071665.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071666.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071667.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071668.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071669.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071670.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071671.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071672.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071673.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071674.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071675.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071676.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071677.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071678.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071679.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071680.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071681.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071682.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071683.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071684.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071685.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071686.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071687.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071688.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071689.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071690.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071691.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071692.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071693.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071694.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071695.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071696.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071697.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071698.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071699.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071700.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071701.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071702.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071703.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071704.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071705.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071706.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071707.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071708.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071709.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071710.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071711.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071712.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071713.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071714.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071715.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071716.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071717.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071718.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071719.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071720.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071721.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071722.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071723.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071724.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071725.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071726.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071727.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071728.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071729.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071730.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071731.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071732.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071733.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071734.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071735.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071736.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071737.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071738.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071739.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071740.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071741.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071742.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071743.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071744.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071745.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071746.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071747.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071748.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071749.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071750.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071751.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071752.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071753.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071754.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071755.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071756.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071757.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071758.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071759.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071760.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071761.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071762.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071763.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071764.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071765.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071766.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071767.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071768.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071769.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071770.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071771.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071772.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071773.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071774.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071775.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071776.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071777.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071778.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071779.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071780.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071781.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071782.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071783.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071784.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071785.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071786.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071787.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071788.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071789.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071790.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071791.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071792.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071793.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071794.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071795.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071796.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071797.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071798.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071799.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071800.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071801.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071802.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071803.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071804.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071805.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071806.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071807.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071808.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071809.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071810.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071811.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071812.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071813.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071814.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071815.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071816.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071817.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071818.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071819.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071820.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071821.dcm >>> > > ERROR: GetDICOMInfo(): dcmGetDWIParams() 7 >>> > > DICOM File: >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071822.dcm >>> > > First Sorting >>> > > Computing Slice Direction >>> > > Vs: -0.8 0 0 >>> > > Vs: -1 0 0 >>> > > Second Sorting >>> > > Counting frames >>> > > nframes = 1 >>> > > nslices = 244 >>> > > ndcmfiles = 244 >>> > > IsDWI = 0 >>> > > PE Dir = ROW (dicom read) >>> > > Loading pixel data >>> > > JPEG compressed, decompressing >>> > > cd /usr/local/freesurfer/subjects/PISA_SPGR/1/subj001 >>> > > dcmdjpeg.fs +te >>> > > /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071579.dcm >>> > > /tmp/root.tmp.decompressed.dcm.Y2rI81 >& >>> > > /tmp/root.tmp.decompressed.dcm.Y2rI81.dcmdjpeg.out >>> > > ERROR: 32512, see >>> /tmp/root.tmp.decompressed.dcm.Y2rI81.dcmdjpeg.out >>> > > for more details >>> > > Linux localhost.localdomain 2.6.32-504.el6.x86_64 #1 SMP Wed >>> Oct >>> 15 >>> > > 04:27:16 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux >>> > > >>> > > recon-all -s subj001 exited with ERRORS at Thu Apr 2 14:26:19 >>> > JST 2015 >>> > > >>> > > For more details, see the log file >>> > > >>> > >>> /usr/local/freesurfer/subjects/PISA_SPGR/1/subj001/scripts/recon-all.log >>> > > To report a problem, see >>> > > http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> > > >>> > > >>> > >>> ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ >>> > > >>> > > I think that this problem come from >>> > > /tmp/root.tmp.decompressed.dcm.Y2rI81.dcmdjpeg.out >>> > > so, i enter the root.tmp.decompressed.dcm.Y2rI81.dcmdjpeg.out >>> file, >>> > > after that the file shows >>> > > >>> > > dcmdjpeg.fs: error while loading shared libraries: >>> > libdcmjpeg.so.3.6: >>> > > cannot open shared object file: No such file or directory >>> > > >>> > > I'm trying to find out the libdcmjpeg, but it dosen't exist.. >>> > > and tmp directory files(tmp image) have x sign on the >>> > compressed.dcm file. >>> > > >>> > > help me doug.. >>> > > >>> > > how can i to do? >>> > > >>> > > >>> > > >>> > > >>> > > >>> > > >>> > > 2015-04-02 2:29 GMT+09:00 Douglas N Greve >>> > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>> > > <mailto:gr...@nmr.mgh.harvard.edu >>> > <mailto:gr...@nmr.mgh.harvard.edu>>>: >>> > > >>> > > You're dicom file is jpeg compressed which FS version 5.3 >>> > does not >>> > > handle. Get the two files from below >>> > > >>> > > >>> > >>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/dcmdjpeg.fs >>> > > >>> > >>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_convert >>> > > >>> > > Copy into $FREESURFER_HOME/bin (make a backup of >>> mri_convert >>> > first) >>> > > >>> > > rehash and try again >>> > > >>> > > doug >>> > > >>> > > >>> > > >>> > > On 04/01/2015 01:14 PM, A-reum Min wrote: >>> > > > Hello >>> > > > My name is areum. >>> > > > I've got a problem while freesurfer subjects >>> reconstruction. >>> > > > I have 37 subjects(control+patient) data. >>> > > > Number of each subject dicom file is 244. >>> > > > my FREESURFER_HOME is /usr/local/freesurfer >>> > > > my SUBJECTS_DIR is >>> /usr/local/freesurfer/subjects/PISA_SPGR >>> > > > (K-1 image is each subjects file(contained dicom file), >>> > K-3 image is >>> > > > subject(no.1)'s 244 dicom file.) >>> > > > When i type >>> > > > [areum@localhost 1]# recon-all -i >>> > > > /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071579.dcm >>> -i >>> > > > /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071580.dcm >>> > -all -s >>> > > subj001 >>> > > > (subj001 means that contain the first subjects >>> > reconstructed data) >>> > > > then, error occured.. >>> > > > >>> > > > Subject Stamp: >>> > freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 >>> > > > Current Stamp: >>> > freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 >>> > > > INFO: SUBJECTS_DIR is >>> /usr/local/freesurfer/subjects/PISA_SPGR >>> > > > Actual FREESURFER_HOME /usr/local/freesurfer >>> > > > Linux localhost.localdomain 2.6.32-504.el6.x86_64 #1 SMP >>> > Wed Oct 15 >>> > > > 04:27:16 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux >>> > > > /usr/local/freesurfer/subjects/PISA_SPGR/subj001 >>> > > > mri_convert >>> > /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071579.dcm >>> > > > >>> > /usr/local/freesurfer/subjects/PISA_SPGR/subj001/mri/orig/001.mgz >>> > > > mri_convert >>> > /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071579.dcm >>> > > > >>> > /usr/local/freesurfer/subjects/PISA_SPGR/subj001/mri/orig/001.mgz >>> > > > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 >>> mreuter >>> > Exp $ >>> > > > reading from >>> > > /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071579.dcm... >>> > > > Starting DICOMRead2() >>> > > > dcmfile = >>> > /usr/local/freesurfer/subjects/PISA_SPGR/1/I0071579.dcm >>> > > > dcmdir = /usr/local/freesurfer/subjects/PISA_SPGR/1 >>> > > > Ref Series No = 3 >>> > > > Found 246 files, checking for dicoms >>> > > > Found 244 dicom files in series. >>> > > > First Sorting >>> > > > Computing Slice Direction >>> > > > Vs: -0.8 0 0 >>> > > > Vs: -1 0 0 >>> > > > Second Sorting >>> > > > Counting frames >>> > > > nframes = 1 >>> > > > nslices = 244 >>> > > > ndcmfiles = 244 >>> > > > PE Dir = ROW (dicom read) >>> > > > TransferSyntaxUID: --1.2.840.10008.1.2.4.70-- >>> > > > ERROR: the pixel data cannot be loaded as it is JPEG >>> > compressed. >>> > > > (Transfer Syntax UID: 1.2.840.10008.1.2.4.70) >>> > > > jpegUID: --1.2.840.10008.1.2.4-- >>> > > > Linux localhost.localdomain 2.6.32-504.el6.x86_64 #1 SMP >>> > Wed Oct 15 >>> > > > 04:27:16 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux >>> > > > recon-all -s subj001 exited with ERRORS at Wed Apr 1 >>> 02:17:23 >>> > > JST 2015 >>> > > > For more details, see the log file >>> > > > >>> > > >>> > >>> /usr/local/freesurfer/subjects/PISA_SPGR/subj001/scripts/recon-all.log >>> > > > To report a problem, see >>> > > > http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> > > > * Question 1.* >>> > > > Is the SUBJECTS_DIR correct path? >>> > > > (PISA_SPGR file contained 37 each subjects file) >>> > > > * Question 2.* >>> > > > I think that '-i' converted dicom file to mgz format. So, >>> > i type the >>> > > > recon-all -i /first of a collection of 244 files >>> directory >>> -i >>> > > /second >>> > > > of a collection of 244 files directory -all -s subj001 >>> ... >>> > is it >>> > > right? >>> > > > If i type the top two images, then automatically 244 >>> images >>> > > > reconstruction? >>> > > > I have 37 subjects files (K-1 image) >>> > > > >>> > > > * Question 3.* >>> > > > If i recon my each subjects data, then do I have to >>> change >>> the >>> > > > path(SUBJECTS_DIR) each time to change the subject file? >>> > > > ex) file number (1) is subject1's dicom, file number (2) >>> is >>> > > subject2' >>> > > > dicom file so, am i just finished (1)data , do i change >>> my >>> > > > SUBJECTS_DIR path for recon to subjets data(2) ? ) >>> > > > * Question 4.* >>> > > > As you can see that K-6 image is subject dicom jpeg... >>> > > > can i use this one? or convert another format image? >>> > > > >>> > > > >>> > > > _______________________________________________ >>> > > > Freesurfer mailing list >>> > > > Freesurfer@nmr.mgh.harvard.edu >>> > <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> > > <mailto:Freesurfer@nmr.mgh.harvard.edu >>> > <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>> > > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> > > >>> > > -- >>> > > Douglas N. Greve, Ph.D. >>> > > MGH-NMR Center >>> > > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>> > <mailto:gr...@nmr.mgh.harvard.edu >>> <mailto:gr...@nmr.mgh.harvard.edu >>> >> >>> > > Phone Number: 617-724-2358 >>> > > Fax: 617-726-7422 >>> > > >>> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>> > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>> > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>> > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>> > > Outgoing: >>> > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> > > >>> > > _______________________________________________ >>> > > Freesurfer mailing list >>> > > Freesurfer@nmr.mgh.harvard.edu >>> > <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> > <mailto:Freesurfer@nmr.mgh.harvard.edu >>> > <mailto:Freesurfer@nmr.mgh.harvard.edu>> >>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> > > >>> > > >>> > > The information in this e-mail is intended only for the >>> > person to >>> > > whom it is >>> > > addressed. If you believe this e-mail was sent to you in >>> > error and >>> > > the e-mail >>> > > contains patient information, please contact the Partners >>> > > Compliance HelpLine at >>> > > http://www.partners.org/complianceline . If the e-mail was sent >>> to >>> > > you in error >>> > > but does not contain patient information, please contact >>> the >>> > > sender and properly >>> > > dispose of the e-mail. >>> > > >>> > > >>> > > >>> > > >>> > > _______________________________________________ >>> > > Freesurfer mailing list >>> > > Freesurfer@nmr.mgh.harvard.edu >>> > <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> > >>> > -- >>> > Douglas N. Greve, Ph.D. >>> > MGH-NMR Center >>> > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >>> > Phone Number: 617-724-2358 >>> > Fax: 617-726-7422 >>> > >>> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >>> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >>> > Outgoing: >>> > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> > >>> > _______________________________________________ >>> > Freesurfer mailing list >>> > Freesurfer@nmr.mgh.harvard.edu <mailto: >>> Freesurfer@nmr.mgh.harvard.edu> >>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> > >>> > >>> > >>> > >>> > _______________________________________________ >>> > Freesurfer mailing list >>> > Freesurfer@nmr.mgh.harvard.edu >>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: >>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
