Can you send your mri_glmfit, mri_glmfit-sim, and mri_mcsim command lines?
On 03/20/2015 02:24 PM, Janosch Linkersdörfer wrote: > Hi all, > > I have a question/problem related to restricting monte carlo cluster > correction to a reduced search space. > > I have: > > 1) created a label including the labels of regions I am interested in > 2) used mri_mcsim with the --label flag and the label created in 1) to create > cached monte carlo simulations for the search space > 3) used mri_glmfit-sim with the --cache-label flag and the sim created in 2) > > The result is: > > - I definitively get more significant clusters than when I use the cortex > label (so there must have been a reduction in search space/no. of vertices), > but > - some of these clusters lie only partly inside the regions included in the > label > - some lie even completely outside of the label > > I thought that I should get only clusters within the borders of the label so > that vertices not in the label would not be considered. > > Thanks for your help, > > Janosch > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
