Hi all, I have a question/problem related to restricting monte carlo cluster correction to a reduced search space.
I have: 1) created a label including the labels of regions I am interested in 2) used mri_mcsim with the --label flag and the label created in 1) to create cached monte carlo simulations for the search space 3) used mri_glmfit-sim with the --cache-label flag and the sim created in 2) The result is: - I definitively get more significant clusters than when I use the cortex label (so there must have been a reduction in search space/no. of vertices), but - some of these clusters lie only partly inside the regions included in the label - some lie even completely outside of the label I thought that I should get only clusters within the borders of the label so that vertices not in the label would not be considered. Thanks for your help, Janosch _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
