Thanks Antonin, I've incorporated the rho1 change into fast_selxavg3.m. Was there a change that would fix the parfile problem?
On 03/04/2015 08:00 AM, Antonin Skoch wrote: > Dear Freesurfer experts, > > I run fsFast by Octave and I came across minor problems, which are > specific to Octave, to get it to work: > > I needed to update Octave from my default version 3.2.4 to version > 3.8.1. (version 3.2.4. did not have required textread function). > > Paradigm file cannot have trailing newline in the end (this is not > problem in MATLAB). fast_ldpar4.m then fails in the reading paradigm > file in the while loop starting at line 62. > > When there is only one run in FSD directory, the fast_selxavg3.m fails > at line 574, since Octave does not allow to mean across non-existent > (4th) dimension. > > Simple modification of the code like > > if (size(rho1.vol,4)==1) > rho1mn.vol= rho1.vol > else > rho1mn.vol = mean(rho1.vol,4); > end > > solved the problem in my case. > > Regards, > > Antonin Skoch > Institute for Clinical and Experimental Medicine > National Institute for Mental Health > Czech Republic > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
