If I set window min to 0 and window max to 3000 the images are displayed
as expected.
Christina Rossmanith
--
Dept. of Neurology
University Hospital Mannheim
University of Heidelberg
On 06.02.2015 12:17, Pernille Iversen wrote:
g466_qMRI_R1.nii.gz
<https://docs.google.com/file/d/0B_UcVoCKdFenTkh6SUU4MVpxYjA/edit?usp=drive_web>
Dear Ruopeng,
I just had to make sure about data rights issues before sending you
the image. No problem there.
I have attached the nifti file that I used. There were some attachment
size issues, please let me know if you cannot access the file.
Thank you for looking into this!
Kind regards,
Pernille
On Mon, Feb 2, 2015 at 3:47 PM, Ruopeng Wang
<rpw...@nmr.mgh.harvard.edu <mailto:rpw...@nmr.mgh.harvard.edu>> wrote:
Would it be possible to send us an image file that you had problem
with?
Best,
Ruopeng
On Feb 2, 2015, at 7:38 AM, Pernille Iversen <pern...@drcmr.dk
<mailto:pern...@drcmr.dk>> wrote:
> Dear Freesurfer team,
> We calculate our T1 images from quantitative sequences. I have
tried to process one of these images with the FS pipeline and it
finishes apparently without errors. However, when I try to load
any of the .mgz files in Freeview, the images appears as a white
box. Changing the slider settings for opacity, window, level, min
or max does not help. The only way I can get a hint of a brain
(including a lot of noise) is to change color map to colorlut, so
maybe Freeview has problems with showing these images.
>
> Any suggestions how to proceed? Are there any special settings I
need for the image generation?
>
> Thanks in advance.
>
> Pernille
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to
whom it is
addressed. If you believe this e-mail was sent to you in error and
the e-mail
contains patient information, please contact the Partners
Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to
you in error
but does not contain patient information, please contact the
sender and properly
dispose of the e-mail.
--
Pernille Iversen, PhD
Manager of Reader Centre
Danish Research Centre for Magnetic resonance
Center for Functional and Diagnostic Imaging and Research
MR-department, 714
Kettegaard Allé 30 tel: 00 45 3862 6205
Hvidovre Hospital fax: 00 45 3862 1620
2650 Hvidovre mail: pern...@drcmr.dk
<mailto:pern...@drcmr.dk>
Denmark www: www.drcmr.dk/
<http://www.drcmr.dk/> www.cimbi.dk <http://www.cimbi.dk>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
