I know that Ruopeng was fixing it a few months ago. Ruopeng, did you finish that fix? doug
On 03/02/2015 10:28 AM, Xiaomin Yue wrote: > Hi Doug, > > thanks for your response. You are right that the freeview in v5.3 > doesn't generate the registration file correctly. However, the newest > development version of freeview can generate a lta registration file > correctly with correct source and target volume. then, a registration > file in reg format can be generated using lta_convert included in the > development version of freesurfer. It is much easier and precise to > manually adjust the registration using freeview than tkregister. It > might be useful to include a tool using freeview to manually adjust > registration in the next freesurfer release. > > Xiaomin > > ------------------------------------------------------------------------ > Date: Sun, 1 Mar 2015 13:57:52 -0500 > From: gr...@nmr.mgh.harvard.edu > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] freeview registration > > > I think that freeview does not correctly generate the registration > file. You can use it to check the regsitration, but us tkregister if > you need to edit it. > doug > > > On 2/27/15 10:18 AM, Xiaomin Yue wrote: > > Hi All, > > After using freeview to manually adjust the registration between a > functional and T1.mgz generated by bbregister, I saved the > registration file in freeview as lta format, which seems the only > option. However, the registration file has same file name for > source and target volume. So, when loading it again to freeview, > the registration is totally wrong. In order to avoid the > problem, I converted the register.dof6.dat to lta formation, where > the lta file has correct source and target volume name. Then, I > loaded the lta file generated from register.dof6.dat, did manual > adjustment, and then saved adjusted registration as a lta file. > the final lta file has same problem. I am using freesurfer 5.3. > Any suggestion is appreciated. > > Thanks, > Xiaomin > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > _______________________________________________ Freesurfer mailing > list Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The > information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and > the e-mail contains patient information, please contact the Partners > Compliance HelpLine at http://www.partners.org/complianceline . If the > e-mail was sent to you in error but does not contain patient > information, please contact the sender and properly dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
