Hi All, After using freeview to manually adjust the registration between a functional and T1.mgz generated by bbregister, I saved the registration file in freeview as lta format, which seems the only option. However, the registration file has same file name for source and target volume. So, when loading it again to freeview, the registration is totally wrong. In order to avoid the problem, I converted the register.dof6.dat to lta formation, where the lta file has correct source and target volume name. Then, I loaded the lta file generated from register.dof6.dat, did manual adjustment, and then saved adjusted registration as a lta file. the final lta file has same problem. I am using freesurfer 5.3. Any suggestion is appreciated. Thanks,Xiaomin
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