We don't have anything to do this directly. However, we do have this tool:
http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi
See if that meets your needs.

doug

On 2/17/15 12:49 PM, David Moreno-Dominguez wrote:
> Hello,
> I am performing clustering ofer data sampled to the fsaverage5 surfaces.
> I would now like to be able to do color matchign and other processes that 
> require a vertex correspondence across both surfaces.
>
> I have noticed that the vertices do not correspond directly (vertex 25 of lh 
> is not the homologous of vertex 25 in rh)
> As both hemispheres have the same number of vertices I guess this has 
> probably already been done, but I have not been able to find this information.
>
> Is there any lookup-table or any easy method to calculate vertex 
> correspondence across hamispheres for fsaverage5 surfaces?
>
> Thank you in advance
>
> David Moreno-Dominguez
> Research Group: Neuroanatomy and Connectivity
> Methods & Development Unit: Cortical Networks and Cognitive Functions
> Max Planck Institute for Human Cognitive and Brain Sciences
> Stephanstraße 1A, 04103 Leipzig, Germany
> Phone: +49 341 9940-2580
> Email: mor...@cbs.mpg.de
> http://www.cbs.mpg.de/~moreno
>
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