Oh, I thought it was already defined. I am referring actually to this thread...
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-August/025251.html ...and, allowing myself to specify my problem, when I type the command 'mri_cnr' what I become in my terminal is something more or less like that: " > > mri_cnr ~/local_subjects/bruce/surf ~/local_subjects/bruce/mri/norm.mgz > > processing MRI volume > /homes/4/fischl/local_subjects/bruce/mri/norm.mgz... > > white = 95.8+-9.7, gray = 65.3+-17.9, csf = 40.1+-17.2 > > gray/white CNR = 2.241, gray/csf CNR = 1.026 > > lh CNR = 1.633 > > white = 95.7+-9.9, gray = 65.5+-17.8, csf = 41.5+-17.4 > > gray/white CNR = 2.205, gray/csf CNR = 0.937 > > rh CNR = 1.571 > > total CNR = 1.602 " My question is, if there is a way to export the CNR value, that is 1.602, to a seperate file alongside with the subject's ID. I suppose there are no such bulit-in commands in FreeSurfer, is that right? Thanks. Cheers, Jacek Manko Dnia 21-01-2015 o godz. 18:38 Douglas N Greve napisał(a): > how do you want to define CNR? > > On 01/21/2015 06:21 AM, Jacek Manko wrote: > > Dear All, > > > > I have been wondering if there is a way (already implemented in the > FreeSurfer) to export CNR measurement outputs to seperate file, like a > table or someting. If not, it will possible only via some pretty > advanced bash scripting, am I right? If so, has anyone some experience > with that matter? > > > > Thanks. > > > > Cheers, > > Jacek Manko > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
