Having both Thalamus and Thalamus-Proper creates all kinds of confusion.
Is there a reason to have both?
9 Left-Thalamus 0 118 14 0
10 Left-Thalamus-Proper 0 118 14 0
-------- Forwarded Message --------
Subject: [Freesurfer] fcseed-sess - segmentation fault
Date: Thu, 8 Jan 2015 20:57:46 +0100 (CET)
From: std...@virgilio.it
Reply-To: std...@virgilio.it, Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu>
To: freesurfer@nmr.mgh.harvard.edu
Hi list,
I'm running FAST on resting state data.
After
fcseed-config -segid 9 -fcname L_Thalamus.dat -fsd rest -mean -cfg
mean.L_Thalamus.config
and
fcseed-sess -s Sess01 -cfg mean.L_Thalamus.config
gives this error:
Loading
/Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/tmp.fcseed-sess.55885/mask.nii.gz
Loading
/Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/fmcpr.nii.gz
Voxel Volume is 64.5752 mm^3
Generating list of segmentation ids
Found 1 segmentations
Computing statistics for each segmentation
0 1 0 0.000
MRIalloc(0, 1, 1): bad parm
Reporting on 0 segmentations
Computing spatial average of each frame
Writing to
/Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/tmp.fcseed-sess.55885/avgwf.mgh
Segmentation fault
Thanks in advance,
Stefano
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