I see. You can try running it through recon-all, but the 2mm is at the edge of what will work
On Mon, 3 Nov 2014, Mahmoud wrote:

Dear Bruce,
Unfortunately, this is the only thing I have.

Mahmoud

On Mon, Nov 3, 2014 at 2:44 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
      is this the only T1-weighted image you have, or do you also have
      something more isotropic?

      On Mon, 3 Nov 2014, Mahmoud wrote:

            Dear all,

            I have some T1 images which are originally in
            coronal view and the in-plane
            resolution is 0.5x0.5mm and slice thickness is 2mm.
            The matrix size is
            512x512.
            I need to segment the left and right hemisphers. As
            the head is tilted I
            also need to register the images. Which atlas you
            recommend to use for this
            case ? Does MIN152_T1_0.5mm work better
            or MIN152_T1_2mm ?

            Thank you,
            Mahmoud


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