Run it with -help to get more info On 10/21/14 12:25 AM, Alshikho, Mohamad J. wrote: > Hi Doug, > I ran the following command line dcmunpack -scr <dicoms dir path> in my > script and it gives me a list of the run/series. How can I save this list as > a log file. I tried to add the flag -targ and the flag -log but it gives me > an error and asked me to specify the series run numbe? > Any suggestions please?. > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Alshikho, Mohamad J. > Sent: Monday, October 20, 2014 3:33 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] unpacksdcmdir > > Sorry I did not notice that this is a different command. I will try it now. > and I will let you now > > Thanks a lot > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Monday, October 20, 2014 3:31 PM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] unpacksdcmdir > > did you try dcmunpack? > > On 10/20/2014 03:30 PM, Alshikho, Mohamad J. wrote: >> Hi Doug, >> But in freeSurfer wiki >> https://surfer.nmr.mgh.harvard.edu/fswiki/FsFastUnpackData they mentioned >> the following "The program that does this is unpacksdcmdir (this is only >> used to unpack Siemens DICOM files)." when I used this command on a my data >> set it gives me an error for certain subjects! >> >> Thanks >> ________________________________________ >> From: freesurfer-boun...@nmr.mgh.harvard.edu >> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve >> [gr...@nmr.mgh.harvard.edu] >> Sent: Monday, October 20, 2014 11:35 AM >> To: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] unpacksdcmdir >> >> dcmunpack will unpack any dicoms >> >> On 10/20/2014 11:21 AM, Shantanu Ghosh wrote: >>> Hi Mohamad >>> >>> You could convert the Dicoms in other s/w to .nii and then read them. >>> Maybe Bruce and Doug have more elegant solutions >>> >>> Hth >>> Shantanu >>> >>> >>> On Mon, October 20, 2014 10:41 am, Alshikho, Mohamad J. wrote: >>>> Hi , >>>> The command <unpacksdcmdir> is only used to unpack Siemens DICOM files, >>>> How can I unpack the non Siemens DICOMs? >>>> >>>> Thanks, >>>> Moahmad >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >
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