Hi Doug, I ran the following command line dcmunpack -scr <dicoms dir path> in my script and it gives me a list of the run/series. How can I save this list as a log file. I tried to add the flag -targ and the flag -log but it gives me an error and asked me to specify the series run numbe? Any suggestions please?. ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Alshikho, Mohamad J. Sent: Monday, October 20, 2014 3:33 PM To: Freesurfer support list Subject: Re: [Freesurfer] unpacksdcmdir
Sorry I did not notice that this is a different command. I will try it now. and I will let you now Thanks a lot ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Monday, October 20, 2014 3:31 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] unpacksdcmdir did you try dcmunpack? On 10/20/2014 03:30 PM, Alshikho, Mohamad J. wrote: > Hi Doug, > But in freeSurfer wiki > https://surfer.nmr.mgh.harvard.edu/fswiki/FsFastUnpackData they mentioned the > following "The program that does this is unpacksdcmdir (this is only used to > unpack Siemens DICOM files)." when I used this command on a my data set it > gives me an error for certain subjects! > > Thanks > ________________________________________ > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Douglas N Greve > [gr...@nmr.mgh.harvard.edu] > Sent: Monday, October 20, 2014 11:35 AM > To: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] unpacksdcmdir > > dcmunpack will unpack any dicoms > > On 10/20/2014 11:21 AM, Shantanu Ghosh wrote: >> Hi Mohamad >> >> You could convert the Dicoms in other s/w to .nii and then read them. >> Maybe Bruce and Doug have more elegant solutions >> >> Hth >> Shantanu >> >> >> On Mon, October 20, 2014 10:41 am, Alshikho, Mohamad J. wrote: >>> Hi , >>> The command <unpacksdcmdir> is only used to unpack Siemens DICOM files, >>> How can I unpack the non Siemens DICOMs? >>> >>> Thanks, >>> Moahmad >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
