You need to create a registration between your subject and your MNI space. Try using spmregister or fslregister (but not bbregister). But there is a bigger problem in that surface-sampling of ROIs in MNI space tends not to do very well, but I'll leave that up to you to evaluate
On 09/29/2014 04:03 AM, Roy Talman wrote: > Hello > I have a segmentation which made on MNI space, is it possible to do > the inverse transform to the segmentation from MNI space to each > subject space? > does the size of the MNI segmentation (218*182*182) should be a problam? > I was traing : > mri_vol2surf MNI_Segmentation.nii --hemi lh --regheader bert --o > /home/cnilab/ProgramFiles/freesurfer/NewFileName.mgz > but i get a empty file. > is there a diffrante way to do this? > > thanks. > roy > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
