Thank you for the help Bruce. I really appreciate it! So if we have a custom made label to we need to somehow add it to the FreeSurferColorLUT.txt.
mris_convert --label lh.cluster1.label lh.white lh.cluster1.label.gii The above is not working for me. I keep getting no errors or anything, just the usage in the terminal. Thanks again! Tara On Thu, Aug 7, 2014 at 12:51 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > p.s. oh, and lh.white is so that we have a surface. The label is just a > (small) set of points on the surface, and doesn't contain other information > needed to generate a surface (like connectivity) > > On Thu, 7 Aug 2014, Tara Miskovich wrote: > > Hi Doug thank you for the response. I just wasn't sure what was required >> here. Specifically why we need to call on the white matter surface. And >> what >> the second V1 would be for. >> Thank you, >> Tara >> [cleardot.gif] >> >> >> >> On Thu, Aug 7, 2014 at 11:05 AM, Tara Miskovich <misko...@uwm.edu> wrote: >> Hi all, >> >> I could really use some help with this >> >> I am trying to convert a group cluster to GIFTI (.gii) format. I just >> need some help running mris_convert. >> >> The example for a label to GIFTI is >> >> mris_convert --label lh.V1.label V1 lh.white lh.V1.label.gii >> >> I'm trying to figure out what is required here. I understand I put in >> the label after label and the output at the end, but in this example I >> am not sure what the V1 and lh.white are for. >> >> Thanks, >> Tara >> >> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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