HI doug, thanks for getting back to me. I was able to solve the problem on my own.
thanks again Jon ________________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N Greve <gr...@nmr.mgh.harvard.edu> Sent: Thursday, July 31, 2014 4:22 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] ERROR: dimension mismatch between input volume and seg Are you sure you are using orig.mgz when you run mri_vol2vol and not something like rawavg.mgz? You don't need to spec orig.mgz explicitly (it will use that by default) doug On 07/21/2014 04:51 PM, Jon Wieser wrote: > hi freesurfer experts > > I am compiling the FA segment stats for several subject > > I used > mri_vol2vol --mov fa.nii --reg register.dat --fstarg ../mri/orig.mgz > --interp nearest --o fa.anat.mgh > > then I used: > > mri_segstats --seg mri/wmparc.mgz --ctab > $FREESURFER_HOME/FreeSurferColorLUT.txt --i dti/fa.anat.mgh --sum dti/fa.stats > > > for some of my subjects, Iam getting the following error: > > > > mri_segstats --seg mri/wmparc.mgz --ctab > $FREESURFER_HOME/FreeSurferColorLUT.txt --i dti/fa.anat.mgh --sum dti/fa.stat > > $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ > cwd > cmdline mri_segstats --seg mri/wmparc.mgz --ctab > /Applications/freesurfer/FreeSurferColorLUT.txt --i dti/fa.anat.mgh --sum > dti/fa.stat > sysname Darwin > hostname psy-blackbird.ad.uwm.edu > machine x86_64 > user wieser > UseRobust 0 > Loading mri/wmparc.mgz > Loading dti/fa.anat.mgh > ERROR: dimension mismatch between input volume and seg > input 256 256 192 > seg 256 256 256 > > > > can you tell me how to fix this? > > thanks > Jon > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
