Oh! it works now! thank you thank you thank you Angela
> when you run make_average_subject, you will still need the --lh > doug > > On 07/29/2014 06:07 PM, angela.fav...@unipd.it wrote: >> ftp >> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/make_average_surface >> Connected to surfer.nmr.mgh.harvard.edu. >> 220-This is the Martinos Center Anonymous FTP service. Use of this site >> 220-shows implicit consent to our Acceptable Use Policy outlined at >> 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php >> 220- >> 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either >> 220- >> 220-229 Entering Extended Passive Mode >> 220- >> 220- and nothing happens OR >> 220- >> 220-229 Entering Extended Passive Mode >> 220-500 Bad EPRT protocol. >> 220- >> 220- try issuing the EPSV command prior to GET or PUT. >> 220- >> 220 >> 331 Please specify the password. >> 230 Login successful. >> Remote system type is UNIX. >> Using binary mode to transfer files. >> 200 Switching to Binary mode. >> 250 Directory successfully changed. >> 250 Directory successfully changed. >> 250 Directory successfully changed. >> 250 Directory successfully changed. >> local: make_average_surface remote: make_average_surface >> 229 Entering Extended Passive Mode (|||37856|). >> 150 Opening BINARY mode data connection for make_average_surface (19641 >> bytes). >> 100% |***********************************| 19641 95.79 KiB/s >> 00:00 ETA >> 226 Transfer complete. >> 19641 bytes received in 00:00 (54.68 KiB/s) >> 221 Goodbye. >> [host-002:~/Desktop/risonanze/studyfree] angelafavaro% cp >> make_average_surface $FREESURFER_HOME/bin/make_average_surface >> cp: /Applications/freesurfer/bin/make_average_surface: Permission denied >> [host-002:~/Desktop/risonanze/studyfree] angelafavaro% sudo cp >> make_average_surface $FREESURFER_HOME/bin/make_average_surface >> Password: >> [host-002:~/Desktop/risonanze/studyfree] angelafavaro% >> make_average_subject --out myatlas.i1 --surf-reg >> fsaverage_sym.sphere.reg >> --subjects subj001 subj002 subj003 subj004 subj005 --xhemi --no-vol >> --template-only >> make_average_surface --out myatlas.i1 --surf-reg >> fsaverage_sym.sphere.reg >> --subjects subj001 subj002 subj003 subj004 subj005 --xhemi --no-vol >> --template-only >> >> /Applications/freesurfer/bin/make_average_surface >> --out myatlas.i1 --surf-reg fsaverage_sym.sphere.reg --subjects subj001 >> subj002 subj003 subj004 subj005 --xhemi --no-vol --template-only >> >> $Id: make_average_surface,v 1.53.2.1 2011/05/25 20:53:44 greve Exp $ >> Mar 29 Lug 2014 23:57:25 CEST >> /Users/angelafavaro/Desktop/risonanze/studyfree >> setenv SUBJECTS_DIR /Users/angelafavaro/Desktop/risonanze/studyfree >> output ddir is /Users/angelafavaro/Desktop/risonanze/studyfree >> uid=501(angelafavaro) gid=20(staff) >> groups=20(staff),204(_developer),100(_lpoperator),98(_lpadmin),81(_appserveradm),80(admin),79(_appserverusr),61(localaccounts),12(everyone),402(com.apple.sharepoint.group.1),401(com.apple.access_screensharing) >> ==================== >> make_average_surface >> ==================== >> Mar 29 Lug 2014 23:57:27 CEST >> /Users/angelafavaro/Desktop/risonanze/studyfree >> /Applications/freesurfer/bin/make_average_surface >> --out myatlas.i1 --surf-reg fsaverage_sym.sphere.reg --subjects subj001 >> subj002 subj003 subj004 subj005 --xhemi --no-vol --template-only >> input subjects: subj001 subj002 subj003 subj004 subj005 >> output subject: myatlas.i1 >> mri_add_xform_to_header -c auto >> /Users/angelafavaro/Desktop/risonanze/studyfree/myatlas.i1/mri/mni305.cor.mgz >> /Users/angelafavaro/Desktop/risonanze/studyfree/myatlas.i1/mri/mni305.cor.mgz >> INFO: extension is mgz >> >> >> #@# Making lh registration template --------- >> /Users/angelafavaro/Desktop/risonanze/studyfree/myatlas.i1 >> mris_make_template -norot -annot aparc lh fsaverage_sym.sphere.reg >> subj001 >> subj001/xhemi subj002 subj002/xhemi subj003 subj003/xhemi subj004 >> subj004/xhemi subj005 subj005/xhemi lh.reg.template.tif >> not aligning hemispheres before averaging. >> zeroing medial wall in aparc >> creating new parameterization... >> >> processing subject subj001 (1 of 10) >> reading spherical surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/lh.fsaverage_sym.sphere.reg... >> reading colortable from annotation file... >> colortable with 36 entries read (originally >> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >> ripping medial wall... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/lh.inflated.H... >> curvature mean = -0.028, std = 0.969 >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/lh.sulc... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/lh.smoothwm... >> >> processing subject subj001/xhemi (2 of 10) >> reading spherical surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/xhemi/surf/lh.fsaverage_sym.sphere.reg... >> curvature mean = 0.003, std = 0.586 >> curvature mean = -0.082, std = 0.795 >> reading colortable from annotation file... >> colortable with 36 entries read (originally >> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >> ripping medial wall... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/xhemi/surf/lh.inflated.H... >> curvature mean = -0.026, std = 1.007 >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/xhemi/surf/lh.sulc... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/xhemi/surf/lh.smoothwm... >> >> processing subject subj002 (3 of 10) >> reading spherical surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/surf/lh.fsaverage_sym.sphere.reg... >> curvature mean = 0.003, std = 0.593 >> curvature mean = -0.071, std = 1.122 >> reading colortable from annotation file... >> colortable with 36 entries read (originally >> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >> ripping medial wall... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/surf/lh.inflated.H... >> curvature mean = -0.025, std = 0.999 >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/surf/lh.sulc... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/surf/lh.smoothwm... >> >> processing subject subj002/xhemi (4 of 10) >> reading spherical surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/xhemi/surf/lh.fsaverage_sym.sphere.reg... >> curvature mean = 0.002, std = 0.597 >> curvature mean = -0.059, std = 1.231 >> reading colortable from annotation file... >> colortable with 36 entries read (originally >> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >> ripping medial wall... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/xhemi/surf/lh.inflated.H... >> curvature mean = -0.032, std = 0.973 >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/xhemi/surf/lh.sulc... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/xhemi/surf/lh.smoothwm... >> >> processing subject subj003 (5 of 10) >> reading spherical surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/surf/lh.fsaverage_sym.sphere.reg... >> curvature mean = 0.003, std = 0.603 >> curvature mean = -0.062, std = 0.880 >> reading colortable from annotation file... >> colortable with 36 entries read (originally >> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >> ripping medial wall... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/surf/lh.inflated.H... >> curvature mean = -0.035, std = 0.995 >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/surf/lh.sulc... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/surf/lh.smoothwm... >> >> processing subject subj003/xhemi (6 of 10) >> reading spherical surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/xhemi/surf/lh.fsaverage_sym.sphere.reg... >> curvature mean = 0.000, std = 0.572 >> curvature mean = -0.070, std = 2.235 >> reading colortable from annotation file... >> colortable with 36 entries read (originally >> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >> ripping medial wall... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/xhemi/surf/lh.inflated.H... >> curvature mean = -0.039, std = 0.991 >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/xhemi/surf/lh.sulc... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/xhemi/surf/lh.smoothwm... >> >> processing subject subj004 (7 of 10) >> reading spherical surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/surf/lh.fsaverage_sym.sphere.reg... >> curvature mean = 0.000, std = 0.586 >> curvature mean = -0.097, std = 4.940 >> reading colortable from annotation file... >> colortable with 36 entries read (originally >> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >> ripping medial wall... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/surf/lh.inflated.H... >> curvature mean = -0.028, std = 1.002 >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/surf/lh.sulc... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/surf/lh.smoothwm... >> >> processing subject subj004/xhemi (8 of 10) >> reading spherical surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/xhemi/surf/lh.fsaverage_sym.sphere.reg... >> curvature mean = 0.002, std = 0.603 >> curvature mean = -0.069, std = 1.134 >> reading colortable from annotation file... >> colortable with 36 entries read (originally >> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >> ripping medial wall... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/xhemi/surf/lh.inflated.H... >> curvature mean = -0.025, std = 1.004 >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/xhemi/surf/lh.sulc... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/xhemi/surf/lh.smoothwm... >> >> processing subject subj005 (9 of 10) >> reading spherical surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/surf/lh.fsaverage_sym.sphere.reg... >> curvature mean = 0.003, std = 0.622 >> curvature mean = -0.067, std = 0.915 >> reading colortable from annotation file... >> colortable with 36 entries read (originally >> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >> ripping medial wall... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/surf/lh.inflated.H... >> curvature mean = -0.038, std = 0.967 >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/surf/lh.sulc... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/surf/lh.smoothwm... >> >> processing subject subj005/xhemi (10 of 10) >> reading spherical surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/xhemi/surf/lh.fsaverage_sym.sphere.reg... >> curvature mean = 0.002, std = 0.591 >> curvature mean = -0.078, std = 0.997 >> reading colortable from annotation file... >> colortable with 36 entries read (originally >> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >> ripping medial wall... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/xhemi/surf/lh.inflated.H... >> curvature mean = -0.030, std = 0.984 >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/xhemi/surf/lh.sulc... >> computing parameterization for surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/xhemi/surf/lh.smoothwm... >> writing updated template with 10 subjects to lh.reg.template.tif... >> curvature mean = 0.003, std = 0.598 >> curvature mean = -0.080, std = 0.911 >> >> >> #@# Making rh registration template --------- >> /Users/angelafavaro/Desktop/risonanze/studyfree/myatlas.i1 >> mris_make_template -norot -annot aparc rh fsaverage_sym.sphere.reg >> subj001 >> subj001/xhemi subj002 subj002/xhemi subj003 subj003/xhemi subj004 >> subj004/xhemi subj005 subj005/xhemi rh.reg.template.tif >> not aligning hemispheres before averaging. >> zeroing medial wall in aparc >> creating new parameterization... >> >> processing subject subj001 (1 of 10) >> reading spherical surface >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/rh.fsaverage_sym.sphere.reg... >> MRISread(/Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/rh.fsaverage_sym.sphere.reg): >> could not open file >> No such file or directory >> mris_make_template: could not read surface file >> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/rh.fsaverage_sym.sphere.reg >> No such file or directory >> ERROR: make_average_surface >> >>> can you send the full terminal output >>> On 07/29/2014 06:00 PM, angela.fav...@unipd.it wrote: >>>> Hi Doug, >>>> unfortunately the same error message appear... it looks for >>>> rh.fsaverage_sym.sphere.reg >>>> >>>> .... >>>> #@# Making rh registration template --------- >>>> /Users/angelafavaro/Desktop/risonanze/studyfree/myatlas.i1 >>>> mris_make_template -norot -annot aparc rh fsaverage_sym.sphere.reg >>>> subj001 >>>> subj001/xhemi subj002 subj002/xhemi subj003 subj003/xhemi subj004 >>>> subj004/xhemi subj005 subj005/xhemi rh.reg.template.tif >>>> not aligning hemispheres before averaging. >>>> zeroing medial wall in aparc >>>> creating new parameterization... >>>> >>>> processing subject subj001 (1 of 10) >>>> reading spherical surface >>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/rh.fsaverage_sym.sphere.reg... >>>> MRISread(/Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/rh.fsaverage_sym.sphere.reg): >>>> could not open file >>>> No such file or directory >>>> mris_make_template: could not read surface file >>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/rh.fsaverage_sym.sphere.reg >>>> No such file or directory >>>> ERROR: make_average_surface >>>> >>>> >>>> >>>> >>>>> Copy this file into $FREESURFER_HOME/bin (make a backup of the >>>>> existing >>>>> one) >>>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/make_average_surface >>>>> >>>>> let me know if that works >>>>> doug >>>>> >>>>> On 07/29/2014 05:37 PM, angela.fav...@unipd.it wrote: >>>>>> I am using 5.3 >>>>>> >>>>>> make_average_subject --out myatlas.i1 --surf-reg >>>>>> fsaverage_sym.sphere.reg >>>>>> --subjects subj001 subj002 subj003 subj004 subj005 --xhemi --no-vol >>>>>> --template-only --lh >>>>>> make_average_surface --out myatlas.i1 --surf-reg >>>>>> fsaverage_sym.sphere.reg >>>>>> --subjects subj001 subj002 subj003 subj004 subj005 --xhemi --no-vol >>>>>> --template-only --lh >>>>>> ERROR: Flag --lh unrecognized. >>>>>> --out myatlas.i1 --surf-reg fsaverage_sym.sphere.reg --subjects >>>>>> subj001 >>>>>> subj002 subj003 subj004 subj005 --xhemi --no-vol --template-only >>>>>> --lh >>>>>> ERROR: make_average_surface >>>>>> >>>>>> >>>>>> >>>>>> >>>>>>> Is that all it prints out? What version of FS are you using? >>>>>>> >>>>>>> >>>>>>> On 07/29/2014 05:26 PM, angela.fav...@unipd.it wrote: >>>>>>>> ERROR: Flag --lh unrecognized. >>>>>>>> >>>>>>>>> Try adding --lh to the make_average_subject command line. Let me >>>>>>>>> know >>>>>>>>> if >>>>>>>>> that works and I'll change the docs >>>>>>>>> doug >>>>>>>>> >>>>>>>>> >>>>>>>>> On 07/29/2014 05:13 PM, angela.fav...@unipd.it wrote: >>>>>>>>>> Hi Doug, this the command and output (here with only five >>>>>>>>>> subjects). >>>>>>>>>> thank you! >>>>>>>>>> >>>>>>>>>> make_average_subject --out myatlas.i1 --surf-reg >>>>>>>>>> fsaverage_sym.sphere.reg >>>>>>>>>> --subjects subj001 subj002 subj003 subj004 subj005 --xhemi >>>>>>>>>> --no-vol >>>>>>>>>> --template-only >>>>>>>>>> make_average_surface --out myatlas.i1 --surf-reg >>>>>>>>>> fsaverage_sym.sphere.reg >>>>>>>>>> --subjects subj001 subj002 subj003 subj004 subj005 --xhemi >>>>>>>>>> --no-vol >>>>>>>>>> --template-only >>>>>>>>>> >>>>>>>>>> /Applications/freesurfer/bin/make_average_surface >>>>>>>>>> --out myatlas.i1 --surf-reg fsaverage_sym.sphere.reg --subjects >>>>>>>>>> subj001 >>>>>>>>>> subj002 subj003 subj004 subj005 --xhemi --no-vol --template-only >>>>>>>>>> >>>>>>>>>> $Id: make_average_surface,v 1.53.2.1 2011/05/25 20:53:44 greve >>>>>>>>>> Exp >>>>>>>>>> $ >>>>>>>>>> Mar 29 Lug 2014 23:09:30 CEST >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree >>>>>>>>>> setenv SUBJECTS_DIR >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree >>>>>>>>>> output ddir is /Users/angelafavaro/Desktop/risonanze/studyfree >>>>>>>>>> uid=501(angelafavaro) gid=20(staff) >>>>>>>>>> groups=20(staff),204(_developer),100(_lpoperator),98(_lpadmin),81(_appserveradm),80(admin),79(_appserverusr),61(localaccounts),12(everyone),402(com.apple.sharepoint.group.1),401(com.apple.access_screensharing) >>>>>>>>>> ==================== >>>>>>>>>> make_average_surface >>>>>>>>>> ==================== >>>>>>>>>> Mar 29 Lug 2014 23:09:31 CEST >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree >>>>>>>>>> /Applications/freesurfer/bin/make_average_surface >>>>>>>>>> --out myatlas.i1 --surf-reg fsaverage_sym.sphere.reg --subjects >>>>>>>>>> subj001 >>>>>>>>>> subj002 subj003 subj004 subj005 --xhemi --no-vol --template-only >>>>>>>>>> input subjects: subj001 subj002 subj003 subj004 subj005 >>>>>>>>>> output subject: myatlas.i1 >>>>>>>>>> mri_add_xform_to_header -c auto >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/myatlas.i1/mri/mni305.cor.mgz >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/myatlas.i1/mri/mni305.cor.mgz >>>>>>>>>> INFO: extension is mgz >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> #@# Making lh registration template --------- >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/myatlas.i1 >>>>>>>>>> mris_make_template -norot -annot aparc lh >>>>>>>>>> fsaverage_sym.sphere.reg >>>>>>>>>> subj001 >>>>>>>>>> subj001/xhemi subj002 subj002/xhemi subj003 subj003/xhemi >>>>>>>>>> subj004 >>>>>>>>>> subj004/xhemi subj005 subj005/xhemi lh.reg.template.tif >>>>>>>>>> not aligning hemispheres before averaging. >>>>>>>>>> zeroing medial wall in aparc >>>>>>>>>> creating new parameterization... >>>>>>>>>> >>>>>>>>>> processing subject subj001 (1 of 10) >>>>>>>>>> reading spherical surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/lh.fsaverage_sym.sphere.reg... >>>>>>>>>> reading colortable from annotation file... >>>>>>>>>> colortable with 36 entries read (originally >>>>>>>>>> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >>>>>>>>>> ripping medial wall... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/lh.inflated.H... >>>>>>>>>> curvature mean = -0.028, std = 0.969 >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/lh.sulc... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/lh.smoothwm... >>>>>>>>>> >>>>>>>>>> processing subject subj001/xhemi (2 of 10) >>>>>>>>>> reading spherical surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/xhemi/surf/lh.fsaverage_sym.sphere.reg... >>>>>>>>>> curvature mean = 0.003, std = 0.586 >>>>>>>>>> curvature mean = -0.082, std = 0.795 >>>>>>>>>> reading colortable from annotation file... >>>>>>>>>> colortable with 36 entries read (originally >>>>>>>>>> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >>>>>>>>>> ripping medial wall... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/xhemi/surf/lh.inflated.H... >>>>>>>>>> curvature mean = -0.026, std = 1.007 >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/xhemi/surf/lh.sulc... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/xhemi/surf/lh.smoothwm... >>>>>>>>>> >>>>>>>>>> processing subject subj002 (3 of 10) >>>>>>>>>> reading spherical surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/surf/lh.fsaverage_sym.sphere.reg... >>>>>>>>>> curvature mean = 0.003, std = 0.593 >>>>>>>>>> curvature mean = -0.071, std = 1.122 >>>>>>>>>> reading colortable from annotation file... >>>>>>>>>> colortable with 36 entries read (originally >>>>>>>>>> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >>>>>>>>>> ripping medial wall... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/surf/lh.inflated.H... >>>>>>>>>> curvature mean = -0.025, std = 0.999 >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/surf/lh.sulc... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/surf/lh.smoothwm... >>>>>>>>>> >>>>>>>>>> processing subject subj002/xhemi (4 of 10) >>>>>>>>>> reading spherical surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/xhemi/surf/lh.fsaverage_sym.sphere.reg... >>>>>>>>>> curvature mean = 0.002, std = 0.597 >>>>>>>>>> curvature mean = -0.059, std = 1.231 >>>>>>>>>> reading colortable from annotation file... >>>>>>>>>> colortable with 36 entries read (originally >>>>>>>>>> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >>>>>>>>>> ripping medial wall... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/xhemi/surf/lh.inflated.H... >>>>>>>>>> curvature mean = -0.032, std = 0.973 >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/xhemi/surf/lh.sulc... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj002/xhemi/surf/lh.smoothwm... >>>>>>>>>> >>>>>>>>>> processing subject subj003 (5 of 10) >>>>>>>>>> reading spherical surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/surf/lh.fsaverage_sym.sphere.reg... >>>>>>>>>> curvature mean = 0.003, std = 0.603 >>>>>>>>>> curvature mean = -0.062, std = 0.880 >>>>>>>>>> reading colortable from annotation file... >>>>>>>>>> colortable with 36 entries read (originally >>>>>>>>>> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >>>>>>>>>> ripping medial wall... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/surf/lh.inflated.H... >>>>>>>>>> curvature mean = -0.035, std = 0.995 >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/surf/lh.sulc... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/surf/lh.smoothwm... >>>>>>>>>> >>>>>>>>>> processing subject subj003/xhemi (6 of 10) >>>>>>>>>> reading spherical surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/xhemi/surf/lh.fsaverage_sym.sphere.reg... >>>>>>>>>> curvature mean = 0.000, std = 0.572 >>>>>>>>>> curvature mean = -0.070, std = 2.235 >>>>>>>>>> reading colortable from annotation file... >>>>>>>>>> colortable with 36 entries read (originally >>>>>>>>>> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >>>>>>>>>> ripping medial wall... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/xhemi/surf/lh.inflated.H... >>>>>>>>>> curvature mean = -0.039, std = 0.991 >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/xhemi/surf/lh.sulc... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj003/xhemi/surf/lh.smoothwm... >>>>>>>>>> >>>>>>>>>> processing subject subj004 (7 of 10) >>>>>>>>>> reading spherical surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/surf/lh.fsaverage_sym.sphere.reg... >>>>>>>>>> curvature mean = 0.000, std = 0.586 >>>>>>>>>> curvature mean = -0.097, std = 4.940 >>>>>>>>>> reading colortable from annotation file... >>>>>>>>>> colortable with 36 entries read (originally >>>>>>>>>> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >>>>>>>>>> ripping medial wall... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/surf/lh.inflated.H... >>>>>>>>>> curvature mean = -0.028, std = 1.002 >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/surf/lh.sulc... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/surf/lh.smoothwm... >>>>>>>>>> >>>>>>>>>> processing subject subj004/xhemi (8 of 10) >>>>>>>>>> reading spherical surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/xhemi/surf/lh.fsaverage_sym.sphere.reg... >>>>>>>>>> curvature mean = 0.002, std = 0.603 >>>>>>>>>> curvature mean = -0.069, std = 1.134 >>>>>>>>>> reading colortable from annotation file... >>>>>>>>>> colortable with 36 entries read (originally >>>>>>>>>> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >>>>>>>>>> ripping medial wall... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/xhemi/surf/lh.inflated.H... >>>>>>>>>> curvature mean = -0.025, std = 1.004 >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/xhemi/surf/lh.sulc... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj004/xhemi/surf/lh.smoothwm... >>>>>>>>>> >>>>>>>>>> processing subject subj005 (9 of 10) >>>>>>>>>> reading spherical surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/surf/lh.fsaverage_sym.sphere.reg... >>>>>>>>>> curvature mean = 0.003, std = 0.622 >>>>>>>>>> curvature mean = -0.067, std = 0.915 >>>>>>>>>> reading colortable from annotation file... >>>>>>>>>> colortable with 36 entries read (originally >>>>>>>>>> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >>>>>>>>>> ripping medial wall... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/surf/lh.inflated.H... >>>>>>>>>> curvature mean = -0.038, std = 0.967 >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/surf/lh.sulc... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/surf/lh.smoothwm... >>>>>>>>>> >>>>>>>>>> processing subject subj005/xhemi (10 of 10) >>>>>>>>>> reading spherical surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/xhemi/surf/lh.fsaverage_sym.sphere.reg... >>>>>>>>>> curvature mean = 0.002, std = 0.591 >>>>>>>>>> curvature mean = -0.078, std = 0.997 >>>>>>>>>> reading colortable from annotation file... >>>>>>>>>> colortable with 36 entries read (originally >>>>>>>>>> /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) >>>>>>>>>> ripping medial wall... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/xhemi/surf/lh.inflated.H... >>>>>>>>>> curvature mean = -0.030, std = 0.984 >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/xhemi/surf/lh.sulc... >>>>>>>>>> computing parameterization for surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj005/xhemi/surf/lh.smoothwm... >>>>>>>>>> writing updated template with 10 subjects to >>>>>>>>>> lh.reg.template.tif... >>>>>>>>>> curvature mean = 0.003, std = 0.598 >>>>>>>>>> curvature mean = -0.080, std = 0.911 >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> #@# Making rh registration template --------- >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/myatlas.i1 >>>>>>>>>> mris_make_template -norot -annot aparc rh >>>>>>>>>> fsaverage_sym.sphere.reg >>>>>>>>>> subj001 >>>>>>>>>> subj001/xhemi subj002 subj002/xhemi subj003 subj003/xhemi >>>>>>>>>> subj004 >>>>>>>>>> subj004/xhemi subj005 subj005/xhemi rh.reg.template.tif >>>>>>>>>> not aligning hemispheres before averaging. >>>>>>>>>> zeroing medial wall in aparc >>>>>>>>>> creating new parameterization... >>>>>>>>>> >>>>>>>>>> processing subject subj001 (1 of 10) >>>>>>>>>> reading spherical surface >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/rh.fsaverage_sym.sphere.reg... >>>>>>>>>> MRISread(/Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/rh.fsaverage_sym.sphere.reg): >>>>>>>>>> could not open file >>>>>>>>>> No such file or directory >>>>>>>>>> mris_make_template: could not read surface file >>>>>>>>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj001/surf/rh.fsaverage_sym.sphere.reg >>>>>>>>>> No such file or directory >>>>>>>>>> ERROR: make_average_surface >>>>>>>>>> [host-002:~/Desktop/ >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> What is the command line that is failing and what is the full >>>>>>>>>>> terminal >>>>>>>>>>> output? >>>>>>>>>>> doug >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> On 07/29/2014 05:55 AM, angela.fav...@unipd.it wrote: >>>>>>>>>>>> Hi all, >>>>>>>>>>>> I am now working with the 5.3 version and performing >>>>>>>>>>>> interhemispheric >>>>>>>>>>>> registration (building my own atlas) >>>>>>>>>>>> >>>>>>>>>>>> after running for all subjects: >>>>>>>>>>>> xhemireg --s subj001.... >>>>>>>>>>>> surfreg --s subj001 --t fsaverage_sym --lh >>>>>>>>>>>> surfreg --s subj001 --t fsaverage_sym --xhemi --lh >>>>>>>>>>>> >>>>>>>>>>>> I have tried first iteration, but the following error occurs: >>>>>>>>>>>> >>>>>>>>>>>> processing subject subj001 (1 of 194) >>>>>>>>>>>> reading spherical surface >>>>>>>>>>>> /Users/angelafavaro/Desktop/Angela/studyfree/subj001/surf/rh.fsaverage_sym.sphere.reg... >>>>>>>>>>>> MRISread(/Users/angelafavaro/Desktop/Angela/studyfree/subj001/surf/rh.fsaverage_sym.sphere.reg): >>>>>>>>>>>> could not open file >>>>>>>>>>>> No such file or directory >>>>>>>>>>>> mris_make_template: could not read surface file >>>>>>>>>>>> /Users/angelafavaro/Desktop/Angela/studyfree/subj002/surf/rh.fsaverage_sym.sphere.reg >>>>>>>>>>>> No such file or directory >>>>>>>>>>>> ERROR: make_average_surface >>>>>>>>>>>> >>>>>>>>>>>> how can I get the rh.fsaverage_sym.sphere.reg file? >>>>>>>>>>>> >>>>>>>>>>>> thank you! >>>>>>>>>>>> >>>>>>>>>>>> Angela >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>>> Hi Matt >>>>>>>>>>>>> >>>>>>>>>>>>> certainly something is wrong, but it's hard to tell why from >>>>>>>>>>>>> the >>>>>>>>>>>>> single >>>>>>>>>>>>> slice. You have big topological defects that are being fixed >>>>>>>>>>>>> incorrectly. >>>>>>>>>>>>> Can you upload the subject and we will take a look? >>>>>>>>>>>>> cheers >>>>>>>>>>>>> Bruce >>>>>>>>>>>>> On Mon, 28 Jul 2014, >>>>>>>>>>>>> Walton, Matt wrote: >>>>>>>>>>>>> >>>>>>>>>>>>>> Hello Freesurfer team, >>>>>>>>>>>>>> I've used freesurfer to segment (recon-all) approximately >>>>>>>>>>>>>> 30 >>>>>>>>>>>>>> different >>>>>>>>>>>>>> subjects from a study. I've noticed that a large number of >>>>>>>>>>>>>> these >>>>>>>>>>>>>> subjects >>>>>>>>>>>>>> have a misclassification of the white and pial boundaries in >>>>>>>>>>>>>> the >>>>>>>>>>>>>> occipital >>>>>>>>>>>>>> lobe (such that grey matter is being classified as white >>>>>>>>>>>>>> matter). >>>>>>>>>>>>>> I >>>>>>>>>>>>>> believe >>>>>>>>>>>>>> this problem is originating from my scanner and original >>>>>>>>>>>>>> data. >>>>>>>>>>>>>> I'm >>>>>>>>>>>>>> acquiring >>>>>>>>>>>>>> a T1W BRAVO sequence on a GE Discovery 750w 3T scanner, >>>>>>>>>>>>>> using >>>>>>>>>>>>>> a >>>>>>>>>>>>>> 32 >>>>>>>>>>>>>> channel >>>>>>>>>>>>>> phased array head coil. For many subjects, this acquistion >>>>>>>>>>>>>> gives >>>>>>>>>>>>>> intensity >>>>>>>>>>>>>> inhomogeneity in the occipital lobe. I've begun using a GE >>>>>>>>>>>>>> based >>>>>>>>>>>>>> correction >>>>>>>>>>>>>> technique (PURE) on the images, and it appears to improve >>>>>>>>>>>>>> the >>>>>>>>>>>>>> intensity >>>>>>>>>>>>>> in >>>>>>>>>>>>>> the occipital lobe, but Freesurfer is still frequently >>>>>>>>>>>>>> misclassifying. >>>>>>>>>>>>>> >>>>>>>>>>>>>> I'm wondering what would be the best way to edit the data. >>>>>>>>>>>>>> I've >>>>>>>>>>>>>> often >>>>>>>>>>>>>> tried >>>>>>>>>>>>>> to edit the wm.vol, but this doesn't seem to fix anything. >>>>>>>>>>>>>> For >>>>>>>>>>>>>> the >>>>>>>>>>>>>> most >>>>>>>>>>>>>> part, the wm.vol is correct to begin with, but the wm >>>>>>>>>>>>>> cutting >>>>>>>>>>>>>> line >>>>>>>>>>>>>> isn't >>>>>>>>>>>>>> segmenting with the wm.vol. I've also tried to add control >>>>>>>>>>>>>> points >>>>>>>>>>>>>> but >>>>>>>>>>>>>> this >>>>>>>>>>>>>> doesn't seem to improve anything either. >>>>>>>>>>>>>> >>>>>>>>>>>>>> I've attached an image which I hope will further explain my >>>>>>>>>>>>>> problems. >>>>>>>>>>>>>> >>>>>>>>>>>>>> Thanks for any help >>>>>>>>>>>>>> >>>>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>>> Freesurfer mailing list >>>>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> The information in this e-mail is intended only for the >>>>>>>>>>>>> person >>>>>>>>>>>>> to >>>>>>>>>>>>> whom >>>>>>>>>>>>> it >>>>>>>>>>>>> is >>>>>>>>>>>>> addressed. If you believe this e-mail was sent to you in >>>>>>>>>>>>> error >>>>>>>>>>>>> and >>>>>>>>>>>>> the >>>>>>>>>>>>> e-mail >>>>>>>>>>>>> contains patient information, please contact the Partners >>>>>>>>>>>>> Compliance >>>>>>>>>>>>> HelpLine at >>>>>>>>>>>>> http://www.partners.org/complianceline . If the e-mail was >>>>>>>>>>>>> sent >>>>>>>>>>>>> to >>>>>>>>>>>>> you >>>>>>>>>>>>> in >>>>>>>>>>>>> error >>>>>>>>>>>>> but does not contain patient information, please contact the >>>>>>>>>>>>> sender >>>>>>>>>>>>> and >>>>>>>>>>>>> properly >>>>>>>>>>>>> dispose of the e-mail. >>>>>>>>>>>>> >>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>> Freesurfer mailing list >>>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>> -- >>>>>>>>>>> Douglas N. Greve, Ph.D. >>>>>>>>>>> MGH-NMR Center >>>>>>>>>>> gr...@nmr.mgh.harvard.edu >>>>>>>>>>> Phone Number: 617-724-2358 >>>>>>>>>>> Fax: 617-726-7422 >>>>>>>>>>> >>>>>>>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>>>> Outgoing: >>>>>>>>>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>>>>>>>> >>>>>>>>>>> _______________________________________________ >>>>>>>>>>> Freesurfer mailing list >>>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>> _______________________________________________ >>>>>>>>>> Freesurfer mailing list >>>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>>> >>>>>>>>>> >>>>>>>>> -- >>>>>>>>> Douglas N. Greve, Ph.D. >>>>>>>>> MGH-NMR Center >>>>>>>>> gr...@nmr.mgh.harvard.edu >>>>>>>>> Phone Number: 617-724-2358 >>>>>>>>> Fax: 617-726-7422 >>>>>>>>> >>>>>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>>>> Outgoing: >>>>>>>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>>>>>> >>>>>>>>> _______________________________________________ >>>>>>>>> Freesurfer mailing list >>>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>>> >>>>>>>>> >>>>>>>> _______________________________________________ >>>>>>>> Freesurfer mailing list >>>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>>> >>>>>>>> >>>>>>> -- >>>>>>> Douglas N. Greve, Ph.D. >>>>>>> MGH-NMR Center >>>>>>> gr...@nmr.mgh.harvard.edu >>>>>>> Phone Number: 617-724-2358 >>>>>>> Fax: 617-726-7422 >>>>>>> >>>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>>> Outgoing: >>>>>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Freesurfer mailing list >>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>> >>>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>> >>>>>> >>>>> -- >>>>> Douglas N. Greve, Ph.D. >>>>> MGH-NMR Center >>>>> gr...@nmr.mgh.harvard.edu >>>>> Phone Number: 617-724-2358 >>>>> Fax: 617-726-7422 >>>>> >>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>> Outgoing: >>>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: >>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
