Dear Doug, Thanks for the quick response. I will try running the analyses on the command line. I've put the whole error message here if that is of any use and sheds any light to the problem? https://www.dropbox.com/s/1h1wzwidt3k1scu/ErrorMessage.txt
Also, when I try to plot the stats tables using QDEC I get the following error: X Error of failed request: BadAlloc (insufficient resources for operation) I've a screenshot of this error here:https://www.dropbox.com/s/1jf9vd4bms0zv99/x%20error.pdf I get this when I try to plot stats tables for those subjects on whom the analysis works on QDEC. Could this be related to my initial problem? I haven't tried generating these stats tables on the command line yet. I also have an additional question. When I run the analysis on QDEC (for those subjects it works for) I get one cluster after correcting for multiple comparisons but when I correct for multiple comparisons using the same settings (?) on the command line I get three clusters. The settings I chose on QDEC were Monte Carlo Null Z at 1.3 (0.05) and with the abs setting. The first of these three clusters matches the one I get on QDEC. I used the following command: mri_glmfit-sim --glmdir directory --cache 1.3 abs --sim-sign abs Why am I getting different results? Thank you so much for your time and help. Best wishes, Hanna ------------------------------ Date: Mon, 28 Jul 2014 12:22:16 -0400 From: Douglas N Greve <gr...@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] QDEC error and analysis termination during 'concatenating volumes' To: freesurfer@nmr.mgh.harvard.edu Message-ID: <53d678b8.7060...@nmr.mgh.harvard.edu> Content-Type: text/plain; charset=UTF-8; format=flowed I can't make anything out of the error msg gif. Somewhere in there, there should be a mris_preproc command line. Can you try cutting and pasting that into a shell? Trying to do this in the context of qdec will be difficult doug On 07/25/2014 05:09 AM, Isotalus, Hanna wrote: > > Dear FreeSurfer gurus, > > > I am using QDEC to run my analyses on a large data set. The analysis > works fine with up to 1224 subjects but as soon as I add subject 1225 > I get an error and the analysis stops. The error displays during > 'concatenating volumes' and it just displays file names. When I try to > run the analysis on the remaining subjects (around 360 of them) the > analysis runs fine ? so I am inclined to think there's nothing wrong > with the data files. I've tried rotating the order of subjects and it > just doesn't seem to allow me to run the analysis on all of them. Do > you have any suggestions? > > > > Here's a link to a screenshot of the error I get: > > https://www.dropbox.com/s/08pqnmgep6crmr5/error%20message.gif > > I can't actually see all of the error message, here's it from the > beginning of what I can see and it continues like that ? displaying > all file names I think. > > > Thank you and best wishes, > > ? > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
