Hi Isaiah what are the input images that you have? What format and what imaging sequence? You should be able to just run recon-all on them (check out recon-all -help)
cheers Bruce On Tue, 22 Jul 2014, Isaiah C. Smith wrote: > Hello All, > > I was testing to see if the freesurfer program works and it does seem to work > for anything besides the free viewer program. I do not know what is wrong > with the others; do you have any ideas? Also I am trying to use the > inhomogeneity correction, convert the images that I have to 1x1x1 ratio, > arrange the directions of the image, and save the program in analyze format. > If possible could you outline that process or give me a link that will direct > me on the process? Thank you. Your help is really appreciated. > > Isaiah Smith > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
