Hi list and Thomas, I'm running the first step to use Yeo's parcellation. The running is wrong. mri_surf2surf --s Control01 --hemi lh --sval-tal-xyz white --tval lh.white.Control01 --tval-xyz --trgsubject fsaverage5/label/rh.Yeo2011_7NetworksConfidence_N1000.mgz Reading target surface reg $SUBJECTS/fsaverage5/label/rh.Yeo2011_7NetworksConfidence_N1000.mgz/surf/lh.sphere.regMRISread( $SUBJECTS/fsaverage5/label/rh.Yeo2011_7NetworksConfidence_N1000.mgz/surf/lh.sphere.reg): could not open fileNot a directorymri_surf2surf: could not read surface $SUBJECTS/fsaverage5/label/rh.Yeo2011_7NetworksConfidence_N1000.mgz/surf/lh.sphere.reg Thanks,
Stefano ----Messaggio originale---- Da: ytho...@csail.mit.edu Data: 7-feb-2014 9.49 A: <std...@virgilio.it> Cc: "freesurfer"<freesurfer@nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] Yeo parcellation Hi Stefano, A) From FreeSurfer 5.2 onwards, the Yeo parcellation files can be found inside $FREESURFER_HOME/subjects/fsaverage/label/, so you can simply use those files there instead of downloading from the wiki. B) You can use mri_surf2surf to transform the annot files from the fsaverage "subject" to the individual subjects' surface. There is an example of how to do it if you run "mri_surf2surf --help" C) Once you have created the subject's specific annot file from part B, I believe you must first run mris_anatomical_stats, and then run aparcstats2table. However, I am not sure about this, so someone on the list should correct me if I am wrong! Regards, Thomas On Fri, Feb 7, 2014 at 3:58 PM, <std...@virgilio.it> wrote: > Hi list, > > I have download the files of Yeo parcellation from > ftp://surfer.nmr.mgh.harvard.edu/pub/data/Yeo_JNeurophysiol11_MNI152.zip. > > I have two questions, please. > > A- Which is the directory where I should put these files? > B-I have already run by recon-all -all all my subjects. How can I added to > them Yeo parcellation? > C-I'd like also calculate the cortical thickness for each Yeo's ROI. Is > possible with aparcstats2table? > > Thanks. > > Regards, > > > Stefano > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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