yes On Wed, 2 Jul 2014, Corinna Bauer wrote:
Whereby the label name is derived from which, the GM labels? i.e. lh.rostralmiddlefrontal_div3On Wed, Jul 2, 2014 at 11:45 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: yes, or mri_binarize --match cheers Bruce On Wed, 2 Jul 2014, Corinna Bauer wrote: And then for breaking the individual labels up, would mri_extract_label be the best option? On Wed, Jul 2, 2014 at 11:01 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: Hi Corinna you need to give some output extension so it knows what file type to write (e.g. .mgz, .nii, .nii.gz. mgh, ...) cheers Bruce On Wed, 2 Jul 2014, Corinna Bauer wrote: Hi Bruce, I am trying to do just that using the following command line: mri_aparc2aseg --s ${subject} --labelwm --hypo-as-wm --rip-unknown --volmask --o ${subj_dir}/mri/wmdivided --annot aparc.split After the slice labeling, I get the following: Used brute-force search on 872 voxels Fixing Parahip LH WM Found 0 clusters Fixing Parahip RH WM Found 0 clusters Writing output aseg to /home/bauer/freesurfer_subjects/FSH_09062013/mri/wmdivided unknown file type for file (/home/bauer/freesurfer_subjects/FSH_09062013/mri/wmdivided) subject = FSH_09062013 annotation = wmdivided hemi = lh outdir = /home/bauer/freesurfer_subjects/FSH_09062013/wm_hardi_labels surface = white Any suggestions? Thanks, Corinna On Tue, Jul 1, 2014 at 6:55 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: Hi Corinna not really, as that is a surface-based utility. You could divide the cortical labels and then recrate the wmparc from it, which might do what you want. cheers Bruce On Tue, 1 Jul 2014, Corinna Bauer wrote: > hello, > I was wondering if it was possible to use mris_divide_parcellation on white > matter labels. > > Thanks, > > Corinna > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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