yes, or mri_binarize --match
cheers
Bruce
On Wed, 2 Jul 2014, Corinna Bauer wrote:
And then for breaking the individual labels up, would mri_extract_label be
the best option?
On Wed, Jul 2, 2014 at 11:01 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Corinna
you need to give some output extension so it knows what file
type to write (e.g. .mgz, .nii, .nii.gz. mgh, ...)
cheers
Bruce
On Wed, 2 Jul 2014, Corinna Bauer wrote:
Hi Bruce,
I am trying to do just that using the following
command line:
mri_aparc2aseg --s ${subject} --labelwm --hypo-as-wm
--rip-unknown --volmask
--o ${subj_dir}/mri/wmdivided --annot aparc.split
After the slice labeling, I get the following:
Used brute-force search on 872 voxels
Fixing Parahip LH WM
Found 0 clusters
Fixing Parahip RH WM
Found 0 clusters
Writing output aseg to
/home/bauer/freesurfer_subjects/FSH_09062013/mri/wmdivided
unknown file type for file
(/home/bauer/freesurfer_subjects/FSH_09062013/mri/wmdivided)
subject = FSH_09062013
annotation = wmdivided
hemi = lh
outdir =
/home/bauer/freesurfer_subjects/FSH_09062013/wm_hardi_labels
surface = white
Any suggestions?
Thanks,
Corinna
On Tue, Jul 1, 2014 at 6:55 PM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu>
wrote:
Hi Corinna
not really, as that is a surface-based
utility. You could divide
the
cortical labels and then recrate the wmparc
from it, which might
do what
you want.
cheers
Bruce
On Tue, 1 Jul 2014, Corinna
Bauer wrote:
> hello,
> I was wondering if it was possible to use
mris_divide_parcellation on white
> matter labels.
>
> Thanks,
>
> Corinna
>
>
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