Hi Max, Could you send a snapshot of an area where your wm edits did not have an effect? Keep in mind the wm voxels you add to the wm.mgz should be well connected to the rest of the wm mask, or else it will tend to get pruned off. You can look at the ?h.orig.nofix surfaces to see if the intial surface model includes your wm edits. -Louis
On Mon, 23 Jun 2014, Max Svensson wrote: > Hi! When I edit my data, for instance wm editing, I do not see the changes > applied to the original image. To > make you understand what I do: > Open up freeview, load the image, Wm and brainmask, with wm at the top. Then > I go into voxel edit, press recon > edit, and start filling in topographical defects and do some wm editing. > HOWEVER, after I run recon all > (recon-all -autorecon2 -autorecon3 -subjid anon)and it's finished without > problems, I do not see the edits done > on my image. Sure, I see the yellow colour which I filled some spots with, > but I was thinking that I would see > an edited image, that is with pia (topographical defects) and wm surface > going out to the areas I edited. Not > only yellow filling which was there before since I edited. Am I doing > something wrong? Is the reconprocessed > images hidden out there somewhere? > Freesurfer team, please help! > > Best, > MAX > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
