Hi Doug I am using the 5.0, but I have followed the instructions and downloaded the new files as indicated.
the xhemi folder has some folders that are empty (bem, label, src, stats, tmp), while the others include files (mri, scripts, surf, touch) Is it possible that the script fails to copy files in the xhemi/label directory? I noted that the script copies other files from the subj00X folders to the xhemi folders, but label files are not copied. May I find the label files in other folders and manually copy them into the xhemi/label folder? which are the correct files? Thank you for your help! Angela > > > I'm not sure why this is failing. Are there other things in the xhemi > folder? What version of FS are you using? > doug > > On 07/01/2014 11:06 AM, angela.fav...@unipd.it wrote: >> sure! thank you >> >> >>> Can you send the log file (or the full terminal output)? >>> On 06/30/2014 03:11 PM, angela.fav...@unipd.it wrote: >>>> Hi all, >>>> I have a problem with 'Surface-based Interhemispheric Registration' >>>> >>>> I followed the instructions and all seem to work, but the command: >>>> 'surfreg --s $subject --t fsaverage_sym --lh --xhemi' >>>> >>>> finish with the error below >>>> (indeed in the xhemi/label directory, there is no file) >>>> >>>> What can I do? >>>> Thank you for any help! >>>> Angela >>>> >>>> #@# Cortical Parc rh Mon Jun 30 17:44:52 CEST 2014 >>>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj024/xhemi/scripts >>>> \n mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz >>>> -seed >>>> 1234 subj024/xhemi rh ../surf/rh.sphere.reg >>>> /Applications/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs >>>> ../label/rh.aparc.annot \n >>>> No such file or directory >>>> mris_ca_label: could not open label file ../label/rh.cortex.label >>>> No such file or directory >>>> >>>> No such file or directory >>>> Darwin host-001.homenet.telecomitalia.it 10.8.0 Darwin Kernel Version >>>> 10.8.0: Tue Jun 7 16:33:36 PDT 2011; >>>> root:xnu-1504.15.3~1/RELEASE_I386 >>>> i386 >>>> >>>> recon-all -s subj024/xhemi exited with ERRORS at Mon Jun 30 17:44:52 >>>> CEST >>>> 2014 >>>> >>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>> -- >>> Douglas N. Greve, Ph.D. >>> MGH-NMR Center >>> gr...@nmr.mgh.harvard.edu >>> Phone Number: 617-724-2358 >>> Fax: 617-726-7422 >>> >>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>> Outgoing: >>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom >>> it >>> is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you >>> in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >>> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
