I'm not sure why this is failing. Are there other things in the xhemi folder? What version of FS are you using? doug
On 07/01/2014 11:06 AM, angela.fav...@unipd.it wrote: > sure! thank you > > >> Can you send the log file (or the full terminal output)? >> On 06/30/2014 03:11 PM, angela.fav...@unipd.it wrote: >>> Hi all, >>> I have a problem with 'Surface-based Interhemispheric Registration' >>> >>> I followed the instructions and all seem to work, but the command: >>> 'surfreg --s $subject --t fsaverage_sym --lh --xhemi' >>> >>> finish with the error below >>> (indeed in the xhemi/label directory, there is no file) >>> >>> What can I do? >>> Thank you for any help! >>> Angela >>> >>> #@# Cortical Parc rh Mon Jun 30 17:44:52 CEST 2014 >>> /Users/angelafavaro/Desktop/risonanze/studyfree/subj024/xhemi/scripts >>> \n mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed >>> 1234 subj024/xhemi rh ../surf/rh.sphere.reg >>> /Applications/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs >>> ../label/rh.aparc.annot \n >>> No such file or directory >>> mris_ca_label: could not open label file ../label/rh.cortex.label >>> No such file or directory >>> >>> No such file or directory >>> Darwin host-001.homenet.telecomitalia.it 10.8.0 Darwin Kernel Version >>> 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 >>> i386 >>> >>> recon-all -s subj024/xhemi exited with ERRORS at Mon Jun 30 17:44:52 >>> CEST >>> 2014 >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
