would automatically generating a medial snapshot with the aparc overlaid
suffice?
On Fri, 6 Jun 2014, Jensen, Sarah wrote:
Dear Freesurfers,
I have a question about whether it is possible to check how well each
participant in my study lines
up with the Freesurfer template in order to check how midline structures were
split. I am concerned
about how well my ACC ROIs line up with the midline of the brain, and would
like to check
for cross-hemisphere contamination along the medial wall. I am particularly
interested
in detecting any potential residual rotation along the Y axis.
I have projected cortical ROIs onto the cortical surface of the average brain
using
the mri_vol2surf function and then used annotation files for the left and right
hemisphere to
project my ROIs from the average template into participant's native space using
the mri_surf2surf
function.
My question is whether it is possible to get an image of how well the fully
segmented Freesurfer
image lines up with the template? Preferably in an axial view with both
hemispheres visible.
Thanks in advance!
Sarah
Sarah K. G. Jensen
Ph.D. Student
Department of Psychology
Institute of Psychiatry
King's College London
E-mail: sarah.jen...@kcl.ac.uk
Phone: 075 2789 3171
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