hmmm, if it does not have tag 28 30, then something is really wrong. This is a Siemens dicom, right? What scanner? doug
On 05/22/2014 06:05 PM, Caroline Lewis wrote: > Thanks Douglas. Now I am running into other errors. I ran the command: > > unpacksdcmdir -src 0008 -targ 0008/mri/orig -fsfast \ > ? -run 8 bold nii 001.nii > > ERROR: reading > 0008/11147SACC000.MR.RESEARCH_NEURO.8.1.2014.05.13.14.42.14.530.48877356.dcm > tag 28 30 > > Also, some of the runs in the "scan.info <http://scan.info>" file say > "err" where it should say "ok" > > Do you have any idea why I'm getting these errors? > > Thanks, > > Caroline > > > On Thu, May 22, 2014 at 4:16 PM, Douglas N Greve > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > Remove the \<<NIFTI>> > > On 05/22/2014 03:45 PM, Caroline Lewis wrote: > > Hi, > > > > I am trying to unpack dicom files and convert them to nifti, but am > > running into an error. I ran the following command with no issue: > > unpacksdcmdir -src dicomdir -targ targetdir -scanonly > targetdir/scan.info <http://scan.info> <http://scan.info> > > > > > > however, when I try to run the next command to actually unpack > the data: > > > > unpacksdcmdir -src 0008 -targ NIFTI -fsfast \ > > ? -run 7 3danat mgz 001.mgz \<<NIFTI>> > > > > I get the following error message: Missing name for redirect. > > Thanks, > > > > Caroline > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > Phone Number: 617-724-2358 <tel:617-724-2358> > Fax: 617-726-7422 <tel:617-726-7422> > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
