Thanks Douglas. Now I am running into other errors. I ran the command: unpacksdcmdir -src 0008 -targ 0008/mri/orig -fsfast \ ? -run 8 bold nii 001.nii
ERROR: reading 0008/11147SACC000.MR.RESEARCH_NEURO.8.1.2014.05.13.14.42.14.530.48877356.dcm tag 28 30 Also, some of the runs in the "scan.info" file say "err" where it should say "ok" Do you have any idea why I'm getting these errors? Thanks, Caroline On Thu, May 22, 2014 at 4:16 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > Remove the \<<NIFTI>> > > On 05/22/2014 03:45 PM, Caroline Lewis wrote: > > Hi, > > > > I am trying to unpack dicom files and convert them to nifti, but am > > running into an error. I ran the following command with no issue: > > unpacksdcmdir -src dicomdir -targ targetdir -scanonly targetdir/ > scan.info <http://scan.info> > > > > > > however, when I try to run the next command to actually unpack the data: > > > > unpacksdcmdir -src 0008 -targ NIFTI -fsfast \ > > ? -run 7 3danat mgz 001.mgz \<<NIFTI>> > > > > I get the following error message: Missing name for redirect. > > Thanks, > > > > Caroline > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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