Dear Freesurfer Staff,
I encountered the following error while running tracula - longitudinal:
ERROR: flag ; unrecognized
The exact command line i ran is the following one:
trac-all -prep -c
'/home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/tracula.config'
I will attach the complete error log as well as my dmrirc file (which I
called in this case tracula.config).
Best,Elia
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Freesurfer version: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0
Linux Distribution: Ubuntu 12.04 precise - Ubuntu 12.04.4 LTS
Environment/Version: Linux king-ubuntu 3.2.0-56-generic #86-Ubuntu SMP Wed Oct
23 09:20:45 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
My Current Working Directory: /home/elia
INFO: SUBJECTS_DIR is /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D INFO: Diffusion root is /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D Actual FREESURFER_HOME /home/alberto/Desktop/freesurfer trac-preproc -c /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/timePoint1.long.template/scripts/dmrirc.local -log /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/timePoint1.long.template/scripts/trac-all.log -cmd /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/timePoint1.long.template/scripts/trac-all.cmd ; trac-preproc -c /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/timePoint2.long.template/scripts/dmrirc.local -log /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/timePoint2.long.template/scripts/trac-all.log -cmd /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/timePoint2.long.template/scripts/trac-all.cmd ; trac-preproc -c /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/template/scripts/dmrirc.local -log /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/template/scripts/trac-all.log -cmd /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/template/scripts/trac-all.cmd ; ERROR: flag ; unrecognized -c /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/timePoint1.long.template/scripts/dmrirc.local -log /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/timePoint1.long.template/scripts/trac-all.log -cmd /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/timePoint1.long.template/scripts/trac-all.cmd ; trac-preproc -c /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/timePoint2.long.template/scripts/dmrirc.local -log /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/timePoint2.long.template/scripts/trac-all.log -cmd /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/timePoint2.long.template/scripts/trac-all.cmd ; trac-preproc -c /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/template/scripts/dmrirc.local -log /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/template/scripts/trac-all.log -cmd /home/elia/scripts/Tracula/LCL/dcmTimePoints_tar-2/T13D/template/scripts/trac-all.cmd ; Linux king-ubuntu 3.2.0-56-generic #86-Ubuntu SMP Wed Oct 23 09:20:45 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux trac-preproc exited with ERRORS at Fri May 9 15:07:28 CEST 2014 IsRunningFile: Undefined variable.
tracula.config
Description: Binary data
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