It is looking for subject P143 in /usr/local/freesurfer/subjects Does it exist? If so, does /usr/local/freesurfer/subjects/P143/mri/brainmask.mgz exist?
On 05/07/2014 01:59 PM, Sherryse Corrow wrote: > Thanks Douglas. We tried that . . . The registration matrix that we need > is not created. Here is the output log file (attached). I am a bit new to > this so I am hoping it has the information you need. After taking a quick > glance at the log file, we noticed there are errors in the log file. > > Step by step, this is what we did after we ran recon-all: > Reg-feat2anat ‹feat OurFeatDirectory.feat ‹subject P209 > > When we open the folder experiment.feat/reg/freesurfer, there is no > anat2exf.register.dat file. However, there is a file called: > anat2exf.register.dat.init. > > Thanks, > Sherryse > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
