Hi Doug, I just read from the .log files that the lh.thickness/area/pial/... files in subject/xhemi/surf are copied from subject/surf at the end of the command. Thus it seems that I can just copy lh.volume, too?
Thanks, Cherry On Mon, Apr 28, 2014 at 6:25 PM, Yizhou Ma <ym...@nyu.edu> wrote: > Thanks Doug. I don't see an error message in xhemireg.?h.log files. Please > see attached for the files. > > > On Mon, Apr 28, 2014 at 4:22 PM, Douglas N Greve < > gr...@nmr.mgh.harvard.edu> wrote: > >> >> Then something went wrong along the way. Check the xhemi/xhemireg.?h.log >> to see if there is an error. If not, send the log file to me >> >> On 04/28/2014 04:14 PM, Yizhou Ma wrote: >> > Thanks Doug. I have ?h.volume in subject/surf but not in >> > subject/xhemi/surf. I followed this page >> > http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi and I think it is a >> > problem with surfreg rather than mris_preproc. Can I just copy the >> > ?h.volume from subject/surf to subject/xhemi/surf? >> > >> > Best, >> > Cherry >> > >> > >> > On Mon, Apr 28, 2014 at 4:01 PM, Douglas N Greve >> > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: >> > >> > >> > >> > There should be a ?h.volume file. Are you sure there is not? You can >> > specify -meas volume when you run mris_preproc >> > doug >> > >> > On 04/27/2014 08:35 PM, Yizhou Ma wrote: >> > > Dear freesurfer experts, >> > > >> > > I am working on a project on cortical asymmetry and I have >> analyzed >> > > vertex-wise cortical thickness/surface area asymmetry. However, I >> > > noticed that Freesurfer doesn't not seem to facilitate such >> analysis >> > > for gray matter volume, as after running surfreg -xhemi there is >> no >> > > ?h.volume file in subject/xhemi/surf. I searched the literature >> and >> > > found studies on gray matter density asymmetry with VBM and >> > ROI-based >> > > volume asymmetry. Is it true that Freesurfer doesn't offer >> > vertex-wise >> > > volume asymmetry analysis? And may I know the rationale? >> > > >> > > Thanks, >> > > Cherry >> > > >> > > >> > > _______________________________________________ >> > > Freesurfer mailing list >> > > Freesurfer@nmr.mgh.harvard.edu >> > <mailto:Freesurfer@nmr.mgh.harvard.edu> >> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > -- >> > Douglas N. Greve, Ph.D. >> > MGH-NMR Center >> > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> >> > Phone Number: 617-724-2358 <tel:617-724-2358> >> > Fax: 617-726-7422 <tel:617-726-7422> >> > >> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> >> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> >> > Outgoing: >> > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu <mailto: >> Freesurfer@nmr.mgh.harvard.edu> >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > >> > The information in this e-mail is intended only for the person to >> > whom it is >> > addressed. If you believe this e-mail was sent to you in error and >> > the e-mail >> > contains patient information, please contact the Partners >> > Compliance HelpLine at >> > http://www.partners.org/complianceline . If the e-mail was sent to >> > you in error >> > but does not contain patient information, please contact the >> > sender and properly >> > dispose of the e-mail. >> > >> > >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >
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