Thanks Doug. I don't see an error message in xhemireg.?h.log files. Please see attached for the files.
On Mon, Apr 28, 2014 at 4:22 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > > Then something went wrong along the way. Check the xhemi/xhemireg.?h.log > to see if there is an error. If not, send the log file to me > > On 04/28/2014 04:14 PM, Yizhou Ma wrote: > > Thanks Doug. I have ?h.volume in subject/surf but not in > > subject/xhemi/surf. I followed this page > > http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi and I think it is a > > problem with surfreg rather than mris_preproc. Can I just copy the > > ?h.volume from subject/surf to subject/xhemi/surf? > > > > Best, > > Cherry > > > > > > On Mon, Apr 28, 2014 at 4:01 PM, Douglas N Greve > > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > > > > > > > There should be a ?h.volume file. Are you sure there is not? You can > > specify -meas volume when you run mris_preproc > > doug > > > > On 04/27/2014 08:35 PM, Yizhou Ma wrote: > > > Dear freesurfer experts, > > > > > > I am working on a project on cortical asymmetry and I have analyzed > > > vertex-wise cortical thickness/surface area asymmetry. However, I > > > noticed that Freesurfer doesn't not seem to facilitate such > analysis > > > for gray matter volume, as after running surfreg -xhemi there is no > > > ?h.volume file in subject/xhemi/surf. I searched the literature and > > > found studies on gray matter density asymmetry with VBM and > > ROI-based > > > volume asymmetry. Is it true that Freesurfer doesn't offer > > vertex-wise > > > volume asymmetry analysis? And may I know the rationale? > > > > > > Thanks, > > > Cherry > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > > Phone Number: 617-724-2358 <tel:617-724-2358> > > Fax: 617-726-7422 <tel:617-726-7422> > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > Outgoing: > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to > > whom it is > > addressed. If you believe this e-mail was sent to you in error and > > the e-mail > > contains patient information, please contact the Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to > > you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
xhemireg.rh.log
Description: Binary data
xhemireg.lh.log
Description: Binary data
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
