If you ran the clusterwise correction, then there will be an output file with the data you want already there. Run mri_glmfit-sim --help to get more info doug
On 03/31/2014 11:28 AM, Tudor Popescu wrote: > Dear Freesurfer experts, > > After a qdec contrast that asked where does thickness correlate with > behavioural score, I got 2 significant clusters, and I would like, for > each of these clusters, to have a list of extracted average thickness > values (across the entire cluster), for each subject that I can then > plot externally against the score values. > > I tried applying answers to previous similar questions with no > success; some of them suggested using mri_segstats, however I'm not > very clear on how annotation files are to be used (I've only used the > QDEC GUI), and I wasn't able to work out the syntax that would give me > what I wanted (assuming mri_segstats is in fact the command to be used) > > Thanks for any help! > > Best wishes, > Tudor > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
