The mgh file is a surface overlay, not a 3d volume. The nii will be in MNI305 space
On 03/27/2014 08:36 AM, charujing123 wrote: > Hi Bruce > It's mri_surf2vol --surfval ./lh.gender_age.thickness.10.mgh --hemi rh > --fillribbon --subject fsaverage --identity fsaverage --template > $SUBJECTS_DIR/fsaverage/mri/orig.mgz --o test.nii > Thanks > All the best. > Rujing Zha > 2014-03-27 > ------------------------------------------------------------------------ > charujing123 > ------------------------------------------------------------------------ > *发件人：*Bruce Fischl <fis...@nmr.mgh.harvard.edu> > *发送时间：*2014-03-27 20:32 > *主题：*Re: [Freesurfer] space conversion in the mri_surf2vol > *收件人：*"Freesurfer support list"<freesurfer@nmr.mgh.harvard.edu> > *抄送：* > Hi Rujing > we need your entire command line to know > cheers > Bruce > On Thu, 27 Mar 2014, charujing123 > wrote: > > Dear FS experts, > > I completed mri_surf2vol converting lh.gender_age.thickness.10.mgh into > > test.nii based on the fsaverage template. > > I want to know what space for the two files(*.mgh and *.nii) > respectively? > > Thanks. > > All the best. > > Rujing Zha > > > > 2014-03-27 > > > > > ____________________________________________________________________________ > > > charujing123 > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
