Hi Andreia, If you remove the underscore from aparc_pial for the --parc flag in the aparcstats2table command, that should do the trick. -Louis
On Wed, 26 Mar 2014, _andre...@sapo.pt wrote: > Hello list, > > I'm trying to get aparc surface area from the pial surface in a table > using aparcstats2table but I'm not being able to... > > I've already created the file aparc_pial.stats inside the stats dir > running the following command line from the subjects's label dir: > > mris_anatomical_stats -mgz -f ../stats/rh.aparcpial -b -a > ./rh.aparc.annot -c ./aparc.ctab subjectname rh pial > > And if I open the aparc_pial.stats file the surfaces are bigger then > in aparc (white matter). > > But when I try to get the table using: > > aparcstats2table --hemi rh --subjects subjectname --parc aparc_pial > --meas area -t rh_aparc_surface_pial.txt > > I get the message: > > Number of subjects : 1 > Building the table.. > ERROR: cannot find > /home/user/visao/Freesurfer/subjectname/stats/rh.aparc_pial.stats > Use --skip flag if you want to continue in such cases > > What's wrong? > > Thank you, > Andreia > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
