Thanks! for some weird unknown reason the log for the preprocessing file of this subject is unusually big (2.8 megabytes) please get it from this link https://dl.dropboxusercontent.com/u/8209026/Archive.zip cheers ds
On Sat, Nov 16, 2013 at 3:13 PM, Anastasia Yendiki < ayend...@nmr.mgh.harvard.edu> wrote: > > Hi David - This log only shows output from the -path step and not from the > -prep step. The file that's missing should be created during the -prep > step, so there's no way to figure out what went wrong without seeing the > output from the pre-processing. > > Please cc the freesurfer list on your reply. > > Thank you, > a.y > > > On Sat, 16 Nov 2013, David Soto wrote: > > Thanks, please see attachedI only noticed this >> >> ERROR: Could not open/home/dsoto/Documents/fmri/rsdtianawmgui/14AB/ >> dlabel/diff/rh.ilf_AS_avg33_m >> ni_bbr_cpts_5_std.txt >> cheers >> DS >> >> >> On Fri, Nov 15, 2013 at 8:55 PM, Anastasia Yendiki >> <ayend...@nmr.mgh.harvard.edu> wrote: >> >> Hi David - Can you please send us the trac-all.log file for this >> subject? >> Without seeing where it stopped and what error messages there >> are it's >> hard to guess what's going on. >> >> Thanks, >> a.y >> >> On Fri, 15 Nov 2013, David Soto wrote: >> >> > Hi - >> > trac-all completed in all my Ps except one >> > and I noticed that the dlabel/diff output does not contain >> all the files >> > >> > I assessed whether it could be do to poor registration, by >> checking >> > the aparc+aseg >> > file and looks allright >> > >> > I also checked the registration of FA maps to standard space >> by >> > freeview -v $FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz >> > dtifit_FA.bbr.nii.gz >> > and seems fine >> > >> > also >> > >> > freeview -v brain_anat_orig.nii.gz lowb_brain.nii.gz >> > >> > which also seems fine >> > >> > any ideas pls? >> > >> > thanks! >> > >> > ds >> > >> > >> > >> > On Fri, Aug 16, 2013 at 5:14 PM, Anastasia Yendiki >> > <ayend...@nmr.mgh.harvard.edu> wrote: >> > >> > I suspect the current problem is caused by poor >> registration. >> > Have you checked the aparc+aseg and/or the registration >> from >> > diffusion to anatomical and from anatomical to MNI? >> > >> > On Fri, 16 Aug 2013, David Soto wrote: >> > >> > >> > >> > -- >> > http://www1.imperial.ac.uk/medicine/people/d.soto/ >> > >> > >> > >> > >> > >> >> >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> >> -- >> http://www1.imperial.ac.uk/medicine/people/d.soto/ >> >> -- >> http://www1.imperial.ac.uk/medicine/people/d.soto/ >> >>
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