Hi Kim, the answer is both easy and difficult. The easy answer is that 
they are completely different methods and will often give inconsistent 
results. I'm not sure what answer the reviewer will accept, and you 
might need to post the same question to the VBM and DARTEL crews. In 
your VBM analysis, I assume that you used modulation (ie, you were 
looking at volume and not "GM density")? VBM performs a voxel by voxel 
comparison and you probably smoothed by 10mm or so. Either of those 
could have washed out the effect. Certainly a reasonable response is 
that the FS analysis is for the entire ROI and and the VBM is voxelwise. 
Hope that help.s

doug



On 11/03/2013 11:55 PM, jh kim wrote:
> Dear Doug and experts
>
> I've analyzed structural changes of the subcortical GM by using both 
> VBM (DARTEL in SPM8) and subcortical volumemetric measurement using 
> FreeSurfer 5.1. While there is no significant volumetric difference 
> between the groups in VBM (corrected p<0.05), FS results showed that 
> some subcortical GM had significant volume reductions in patients 
> relative to controls (MANCOVA controlling for the effect of ICV, age, 
> gender, followed by Bonferroni correction).
> One of the referees raised the question regarding this discrepancy 
> between the VBM and FS findings.
> How can I cope with it?
>
> Thank you in advance for your help.
>
> Kim
>
>
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-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
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Fax: 617-726-7422

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